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ARFIP1 (ADP ribosylation factor interacting protein 1)

Identity

Alias_symbol (synonym)HSU52521
Other alias
HGNC (Hugo) ARFIP1
LocusID (NCBI) 27236
Atlas_Id 46258
Location 4q31.3  [Link to chromosome band 4q31]
Location_base_pair Starts at 152779937 and ends at 152911911 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARFIP1 (4q31.3) / DUSP1 (5q35.1)ARFIP1 (4q31.3) / FGB (4q31.3)ARFIP1 (4q31.3) / FHDC1 (4q31.3)
FHDC1 (4q31.3) / ARFIP1 (4q31.3)KIAA0922 (4q31.3) / ARFIP1 (4q31.3)MAP3K5 (6q23.3) / ARFIP1 (4q31.3)
TRIM2 (4q31.3) / ARFIP1 (4q31.3)ARFIP1 4q31.3 / FHDC1 4q31.3ARFIP1 4q31.3 / FGB 4q31.3
FHDC1 4q31.3 / ARFIP1 4q31.3KIAA0922 4q31.3 / ARFIP1 4q31.3MAP3K5 6q23.3 / ARFIP1 4q31.3
TRIM2 4q31.3 / ARFIP1 4q31.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARFIP1   21496
Cards
Entrez_Gene (NCBI)ARFIP1  27236  ADP ribosylation factor interacting protein 1
AliasesHSU52521
GeneCards (Weizmann)ARFIP1
Ensembl hg19 (Hinxton)ENSG00000164144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164144 [Gene_View]  chr4:152779937-152911911 [Contig_View]  ARFIP1 [Vega]
ICGC DataPortalENSG00000164144
TCGA cBioPortalARFIP1
AceView (NCBI)ARFIP1
Genatlas (Paris)ARFIP1
WikiGenes27236
SOURCE (Princeton)ARFIP1
Genetics Home Reference (NIH)ARFIP1
Genomic and cartography
GoldenPath hg38 (UCSC)ARFIP1  -     chr4:152779937-152911911 +  4q31.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARFIP1  -     4q31.3   [Description]    (hg19-Feb_2009)
EnsemblARFIP1 - 4q31.3 [CytoView hg19]  ARFIP1 - 4q31.3 [CytoView hg38]
Mapping of homologs : NCBIARFIP1 [Mapview hg19]  ARFIP1 [Mapview hg38]
OMIM605928   
Gene and transcription
Genbank (Entrez)AF124489 AI634366 AK096509 AK290472 AK299600
RefSeq transcript (Entrez)NM_001025593 NM_001025595 NM_001287431 NM_001287432 NM_001287433 NM_014447
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARFIP1
Cluster EST : UnigeneHs.416089 [ NCBI ]
CGAP (NCI)Hs.416089
Alternative Splicing GalleryENSG00000164144
Gene ExpressionARFIP1 [ NCBI-GEO ]   ARFIP1 [ EBI - ARRAY_EXPRESS ]   ARFIP1 [ SEEK ]   ARFIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARFIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27236
GTEX Portal (Tissue expression)ARFIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53367   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53367  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53367
Splice isoforms : SwissVarP53367
PhosPhoSitePlusP53367
Tomaine pattern : Prosite (Expaxy)AH (PS50870)   
Domains : Interpro (EBI)AH/BAR-dom    AH_dom    Arfaptin-1    Arfaptin_fam   
Domain families : Pfam (Sanger)Arfaptin (PF06456)   
Domain families : Pfam (NCBI)pfam06456   
Domain families : Smart (EMBL)Arfaptin (SM01015)  
Conserved Domain (NCBI)ARFIP1
DMDM Disease mutations27236
Blocks (Seattle)ARFIP1
SuperfamilyP53367
Human Protein AtlasENSG00000164144
Peptide AtlasP53367
HPRD09331
IPIIPI00021258   IPI00216520   IPI00744919   IPI00910325   
Protein Interaction databases
DIP (DOE-UCLA)P53367
IntAct (EBI)P53367
FunCoupENSG00000164144
BioGRIDARFIP1
STRING (EMBL)ARFIP1
ZODIACARFIP1
Ontologies - Pathways
QuickGOP53367
Ontology : AmiGOGolgi membrane  cytosol  intracellular protein transport  protein domain specific binding  trans-Golgi network membrane  regulation of Arp2/3 complex-mediated actin nucleation  cadherin binding  regulation of protein secretion  phosphatidylinositol-4-phosphate binding  
Ontology : EGO-EBIGolgi membrane  cytosol  intracellular protein transport  protein domain specific binding  trans-Golgi network membrane  regulation of Arp2/3 complex-mediated actin nucleation  cadherin binding  regulation of protein secretion  phosphatidylinositol-4-phosphate binding  
NDEx NetworkARFIP1
Atlas of Cancer Signalling NetworkARFIP1
Wikipedia pathwaysARFIP1
Orthology - Evolution
OrthoDB27236
GeneTree (enSembl)ENSG00000164144
Phylogenetic Trees/Animal Genes : TreeFamARFIP1
HOVERGENP53367
HOGENOMP53367
Homologs : HomoloGeneARFIP1
Homology/Alignments : Family Browser (UCSC)ARFIP1
Gene fusions - Rearrangements
Fusion : MitelmanARFIP1/FGB [4q31.3/4q31.3]  
Fusion : MitelmanFHDC1/ARFIP1 [4q31.3/4q31.3]  [t(4;4)(q31;q31)]  
Fusion : MitelmanKIAA0922/ARFIP1 [4q31.3/4q31.3]  [t(4;4)(q31;q31)]  
Fusion : MitelmanMAP3K5/ARFIP1 [6q23.3/4q31.3]  [t(4;6)(q31;q23)]  
Fusion : MitelmanTRIM2/ARFIP1 [4q31.3/4q31.3]  [t(4;4)(q31;q31)]  
Fusion: TCGAARFIP1 4q31.3 FGB 4q31.3 BRCA
Fusion: TCGAFHDC1 4q31.3 ARFIP1 4q31.3 LUAD
Fusion: TCGAKIAA0922 4q31.3 ARFIP1 4q31.3 PRAD
Fusion: TCGAMAP3K5 6q23.3 ARFIP1 4q31.3 HNSC
Fusion: TCGATRIM2 4q31.3 ARFIP1 4q31.3 BRCA OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARFIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARFIP1
dbVarARFIP1
ClinVarARFIP1
1000_GenomesARFIP1 
Exome Variant ServerARFIP1
ExAC (Exome Aggregation Consortium)ARFIP1 (select the gene name)
Genetic variants : HAPMAP27236
Genomic Variants (DGV)ARFIP1 [DGVbeta]
DECIPHERARFIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARFIP1 
Mutations
ICGC Data PortalARFIP1 
TCGA Data PortalARFIP1 
Broad Tumor PortalARFIP1
OASIS PortalARFIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARFIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARFIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARFIP1
DgiDB (Drug Gene Interaction Database)ARFIP1
DoCM (Curated mutations)ARFIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARFIP1 (select a term)
intoGenARFIP1
Cancer3DARFIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605928   
Orphanet
MedgenARFIP1
Genetic Testing Registry ARFIP1
NextProtP53367 [Medical]
TSGene27236
GENETestsARFIP1
Target ValidationARFIP1
Huge Navigator ARFIP1 [HugePedia]
snp3D : Map Gene to Disease27236
BioCentury BCIQARFIP1
ClinGenARFIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27236
Chemical/Pharm GKB GenePA134920621
Clinical trialARFIP1
Miscellaneous
canSAR (ICR)ARFIP1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARFIP1
EVEXARFIP1
GoPubMedARFIP1
iHOPARFIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:57:48 CEST 2017

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