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ARFIP2 (ADP ribosylation factor interacting protein 2)

Identity

Alias_symbol (synonym)POR1
Other alias
HGNC (Hugo) ARFIP2
LocusID (NCBI) 23647
Atlas_Id 691
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 6495913 and ends at 6502709 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
LOC440335 () / ARFIP2 (11p15.4)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARFIP2   17160
Cards
Entrez_Gene (NCBI)ARFIP2  23647  ADP ribosylation factor interacting protein 2
AliasesPOR1
GeneCards (Weizmann)ARFIP2
Ensembl hg19 (Hinxton)ENSG00000132254 [Gene_View]  chr11:6495913-6502709 [Contig_View]  ARFIP2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000132254 [Gene_View]  chr11:6495913-6502709 [Contig_View]  ARFIP2 [Vega]
ICGC DataPortalENSG00000132254
TCGA cBioPortalARFIP2
AceView (NCBI)ARFIP2
Genatlas (Paris)ARFIP2
WikiGenes23647
SOURCE (Princeton)ARFIP2
Genetics Home Reference (NIH)ARFIP2
Genomic and cartography
GoldenPath hg19 (UCSC)ARFIP2  -     chr11:6495913-6502709 -  11p15.4   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARFIP2  -     11p15.4   [Description]    (hg38-Dec_2013)
EnsemblARFIP2 - 11p15.4 [CytoView hg19]  ARFIP2 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIARFIP2 [Mapview hg19]  ARFIP2 [Mapview hg38]
OMIM601638   
Gene and transcription
Genbank (Entrez)AK026390 AK300855 AK301856 AK301972 AK304512
RefSeq transcript (Entrez)NM_001242854 NM_001242855 NM_001242856 NM_012402
RefSeq genomic (Entrez)NC_000011 NC_018922 NT_009237 NW_004929378
Consensus coding sequences : CCDS (NCBI)ARFIP2
Cluster EST : UnigeneHs.732203 [ NCBI ]
CGAP (NCI)Hs.732203
Alternative Splicing GalleryENSG00000132254
Gene ExpressionARFIP2 [ NCBI-GEO ]   ARFIP2 [ EBI - ARRAY_EXPRESS ]   ARFIP2 [ SEEK ]   ARFIP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARFIP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23647
GTEX Portal (Tissue expression)ARFIP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP53365   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP53365  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP53365
Splice isoforms : SwissVarP53365
PhosPhoSitePlusP53365
Domaine pattern : Prosite (Expaxy)AH (PS50870)   
Domains : Interpro (EBI)AH/BAR-dom    AH_dom    Arfaptin_fam   
Domain families : Pfam (Sanger)Arfaptin (PF06456)   
Domain families : Pfam (NCBI)pfam06456   
Domain families : Smart (EMBL)Arfaptin (SM01015)  
Conserved Domain (NCBI)ARFIP2
DMDM Disease mutations23647
Blocks (Seattle)ARFIP2
PDB (SRS)1I49    1I4D    1I4L    1I4T    4DCN   
PDB (PDBSum)1I49    1I4D    1I4L    1I4T    4DCN   
PDB (IMB)1I49    1I4D    1I4L    1I4T    4DCN   
PDB (RSDB)1I49    1I4D    1I4L    1I4T    4DCN   
Structural Biology KnowledgeBase1I49    1I4D    1I4L    1I4T    4DCN   
SCOP (Structural Classification of Proteins)1I49    1I4D    1I4L    1I4T    4DCN   
CATH (Classification of proteins structures)1I49    1I4D    1I4L    1I4T    4DCN   
SuperfamilyP53365
Human Protein AtlasENSG00000132254
Peptide AtlasP53365
HPRD07209
IPIIPI00021257   IPI00909529   IPI00908576   IPI01013199   IPI00983939   IPI00983253   
Protein Interaction databases
DIP (DOE-UCLA)P53365
IntAct (EBI)P53365
FunCoupENSG00000132254
BioGRIDARFIP2
STRING (EMBL)ARFIP2
ZODIACARFIP2
Ontologies - Pathways
QuickGOP53365
Ontology : AmiGOruffle  protein binding  GTP binding  cytoplasm  cytosol  plasma membrane  cell cortex  movement of cell or subcellular component  small GTPase mediated signal transduction  protein domain specific binding  lamellipodium assembly  actin cytoskeleton organization  GTP-dependent protein binding  GTP-dependent protein binding  ruffle organization  trans-Golgi network membrane  regulation of Arp2/3 complex-mediated actin nucleation  Rac GTPase binding  phosphatidylinositol-4-phosphate binding  
Ontology : EGO-EBIruffle  protein binding  GTP binding  cytoplasm  cytosol  plasma membrane  cell cortex  movement of cell or subcellular component  small GTPase mediated signal transduction  protein domain specific binding  lamellipodium assembly  actin cytoskeleton organization  GTP-dependent protein binding  GTP-dependent protein binding  ruffle organization  trans-Golgi network membrane  regulation of Arp2/3 complex-mediated actin nucleation  Rac GTPase binding  phosphatidylinositol-4-phosphate binding  
Pathways : BIOCARTARac 1 cell motility signaling pathway [Genes]   
NDEx NetworkARFIP2
Atlas of Cancer Signalling NetworkARFIP2
Wikipedia pathwaysARFIP2
Orthology - Evolution
OrthoDB23647
GeneTree (enSembl)ENSG00000132254
Phylogenetic Trees/Animal Genes : TreeFamARFIP2
HOVERGENP53365
HOGENOMP53365
Homologs : HomoloGeneARFIP2
Homology/Alignments : Family Browser (UCSC)ARFIP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARFIP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARFIP2
dbVarARFIP2
ClinVarARFIP2
1000_GenomesARFIP2 
Exome Variant ServerARFIP2
ExAC (Exome Aggregation Consortium)ARFIP2 (select the gene name)
Genetic variants : HAPMAP23647
Genomic Variants (DGV)ARFIP2 [DGVbeta]
DECIPHER (Syndromes)11:6495913-6502709  ENSG00000132254
CONAN: Copy Number AnalysisARFIP2 
Mutations
ICGC Data PortalARFIP2 
TCGA Data PortalARFIP2 
Broad Tumor PortalARFIP2
OASIS PortalARFIP2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARFIP2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARFIP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARFIP2
DgiDB (Drug Gene Interaction Database)ARFIP2
DoCM (Curated mutations)ARFIP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARFIP2 (select a term)
intoGenARFIP2
Cancer3DARFIP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601638   
Orphanet
MedgenARFIP2
Genetic Testing Registry ARFIP2
NextProtP53365 [Medical]
TSGene23647
GENETestsARFIP2
Huge Navigator ARFIP2 [HugePedia]
snp3D : Map Gene to Disease23647
BioCentury BCIQARFIP2
ClinGenARFIP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23647
Chemical/Pharm GKB GenePA134879398
Clinical trialARFIP2
Miscellaneous
canSAR (ICR)ARFIP2 (select the gene name)
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARFIP2
EVEXARFIP2
GoPubMedARFIP2
iHOPARFIP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:18 CET 2017

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