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ARFRP1 (ADP ribosylation factor related protein 1)

Identity

Alias_symbol (synonym)ARP
Arp1
ARL18
Other alias
HGNC (Hugo) ARFRP1
LocusID (NCBI) 10139
Atlas_Id 692
Location 20q13.33  [Link to chromosome band 20q13]
Location_base_pair Starts at 63698642 and ends at 63708013 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARFRP1 (20q13.33) / HSPA9 (5q31.2)ARFRP1 (20q13.33) / IRX2 (5p15.33)ARFRP1 (20q13.33) / ODF2 (9q34.11)
ARFRP1 (20q13.33) / TPRN (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARFRP1   662
Cards
Entrez_Gene (NCBI)ARFRP1  10139  ADP ribosylation factor related protein 1
AliasesARL18; ARP; Arp1
GeneCards (Weizmann)ARFRP1
Ensembl hg19 (Hinxton)ENSG00000101246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000101246 [Gene_View]  chr20:63698642-63708013 [Contig_View]  ARFRP1 [Vega]
ICGC DataPortalENSG00000101246
TCGA cBioPortalARFRP1
AceView (NCBI)ARFRP1
Genatlas (Paris)ARFRP1
WikiGenes10139
SOURCE (Princeton)ARFRP1
Genetics Home Reference (NIH)ARFRP1
Genomic and cartography
GoldenPath hg38 (UCSC)ARFRP1  -     chr20:63698642-63708013 -  20q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARFRP1  -     20q13.33   [Description]    (hg19-Feb_2009)
EnsemblARFRP1 - 20q13.33 [CytoView hg19]  ARFRP1 - 20q13.33 [CytoView hg38]
Mapping of homologs : NCBIARFRP1 [Mapview hg19]  ARFRP1 [Mapview hg38]
OMIM604699   
Gene and transcription
Genbank (Entrez)AK095962 AL522492 AL533893 AL833084 AW139294
RefSeq transcript (Entrez)NM_001134758 NM_001267544 NM_001267545 NM_001267546 NM_001267547 NM_001267548 NM_001267549 NM_003224
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARFRP1
Cluster EST : UnigeneHs.389277 [ NCBI ]
CGAP (NCI)Hs.389277
Alternative Splicing GalleryENSG00000101246
Gene ExpressionARFRP1 [ NCBI-GEO ]   ARFRP1 [ EBI - ARRAY_EXPRESS ]   ARFRP1 [ SEEK ]   ARFRP1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARFRP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10139
GTEX Portal (Tissue expression)ARFRP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13795   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ13795  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ13795
Splice isoforms : SwissVarQ13795
PhosPhoSitePlusQ13795
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARFRP1
DMDM Disease mutations10139
Blocks (Seattle)ARFRP1
SuperfamilyQ13795
Human Protein AtlasENSG00000101246
Peptide AtlasQ13795
HPRD05264
IPIIPI00015178   IPI00028547   IPI00914030   IPI00028549   
Protein Interaction databases
DIP (DOE-UCLA)Q13795
IntAct (EBI)Q13795
FunCoupENSG00000101246
BioGRIDARFRP1
STRING (EMBL)ARFRP1
ZODIACARFRP1
Ontologies - Pathways
QuickGOQ13795
Ontology : AmiGOGTPase activity  protein binding  GTP binding  Golgi apparatus  trans-Golgi network  cytosol  signal transduction  small GTPase mediated signal transduction  gastrulation  membrane  trans-Golgi network membrane  protein localization to Golgi apparatus  retrograde transport, endosome to Golgi  Golgi to plasma membrane protein transport  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  Golgi apparatus  trans-Golgi network  cytosol  signal transduction  small GTPase mediated signal transduction  gastrulation  membrane  trans-Golgi network membrane  protein localization to Golgi apparatus  retrograde transport, endosome to Golgi  Golgi to plasma membrane protein transport  
NDEx NetworkARFRP1
Atlas of Cancer Signalling NetworkARFRP1
Wikipedia pathwaysARFRP1
Orthology - Evolution
OrthoDB10139
GeneTree (enSembl)ENSG00000101246
Phylogenetic Trees/Animal Genes : TreeFamARFRP1
HOVERGENQ13795
HOGENOMQ13795
Homologs : HomoloGeneARFRP1
Homology/Alignments : Family Browser (UCSC)ARFRP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARFRP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARFRP1
dbVarARFRP1
ClinVarARFRP1
1000_GenomesARFRP1 
Exome Variant ServerARFRP1
ExAC (Exome Aggregation Consortium)ARFRP1 (select the gene name)
Genetic variants : HAPMAP10139
Genomic Variants (DGV)ARFRP1 [DGVbeta]
DECIPHERARFRP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARFRP1 
Mutations
ICGC Data PortalARFRP1 
TCGA Data PortalARFRP1 
Broad Tumor PortalARFRP1
OASIS PortalARFRP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARFRP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARFRP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARFRP1
DgiDB (Drug Gene Interaction Database)ARFRP1
DoCM (Curated mutations)ARFRP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARFRP1 (select a term)
intoGenARFRP1
Cancer3DARFRP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604699   
Orphanet
MedgenARFRP1
Genetic Testing Registry ARFRP1
NextProtQ13795 [Medical]
TSGene10139
GENETestsARFRP1
Huge Navigator ARFRP1 [HugePedia]
snp3D : Map Gene to Disease10139
BioCentury BCIQARFRP1
ClinGenARFRP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10139
Chemical/Pharm GKB GenePA24946
Clinical trialARFRP1
Miscellaneous
canSAR (ICR)ARFRP1 (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARFRP1
EVEXARFRP1
GoPubMedARFRP1
iHOPARFRP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:29 CEST 2017

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