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ARGFX (arginine-fifty homeobox)

Identity

Other alias-
HGNC (Hugo) ARGFX
LocusID (NCBI) 503582
Atlas_Id 60457
Location 3q13.33  [Link to chromosome band 3q13]
Location_base_pair Starts at 121567931 and ends at 121590622 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARGFX   30146
Cards
Entrez_Gene (NCBI)ARGFX  503582  arginine-fifty homeobox
Aliases
GeneCards (Weizmann)ARGFX
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr3:121567931-121590622 [Contig_View]  ARGFX [Vega]
TCGA cBioPortalARGFX
AceView (NCBI)ARGFX
Genatlas (Paris)ARGFX
WikiGenes503582
SOURCE (Princeton)ARGFX
Genetics Home Reference (NIH)ARGFX
Genomic and cartography
GoldenPath hg38 (UCSC)ARGFX  -     chr3:121567931-121590622 +  3q13.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARGFX  -     3q13.33   [Description]    (hg19-Feb_2009)
EnsemblARGFX - 3q13.33 [CytoView hg19]  ARGFX - 3q13.33 [CytoView hg38]
Mapping of homologs : NCBIARGFX [Mapview hg19]  ARGFX [Mapview hg38]
OMIM611164   
Gene and transcription
Genbank (Entrez)BX282631
RefSeq transcript (Entrez)NM_001012659
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARGFX
Cluster EST : UnigeneHs.224976 [ NCBI ]
CGAP (NCI)Hs.224976
Gene ExpressionARGFX [ NCBI-GEO ]   ARGFX [ EBI - ARRAY_EXPRESS ]   ARGFX [ SEEK ]   ARGFX [ MEM ]
Gene Expression Viewer (FireBrowse)ARGFX [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)503582
GTEX Portal (Tissue expression)ARGFX
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NJG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NJG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NJG6
Splice isoforms : SwissVarA6NJG6
PhosPhoSitePlusA6NJG6
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)   
Domains : Interpro (EBI)Homeobox-like    Homeobox_CS    Homeobox_dom   
Domain families : Pfam (Sanger)Homeobox (PF00046)   
Domain families : Pfam (NCBI)pfam00046   
Domain families : Smart (EMBL)HOX (SM00389)  
Conserved Domain (NCBI)ARGFX
DMDM Disease mutations503582
Blocks (Seattle)ARGFX
SuperfamilyA6NJG6
Peptide AtlasA6NJG6
HPRD18525
IPIIPI00385762   
Protein Interaction databases
DIP (DOE-UCLA)A6NJG6
IntAct (EBI)A6NJG6
BioGRIDARGFX
STRING (EMBL)ARGFX
ZODIACARGFX
Ontologies - Pathways
QuickGOA6NJG6
Ontology : AmiGOnucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
Ontology : EGO-EBInucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  sequence-specific DNA binding  
NDEx NetworkARGFX
Atlas of Cancer Signalling NetworkARGFX
Wikipedia pathwaysARGFX
Orthology - Evolution
OrthoDB503582
Phylogenetic Trees/Animal Genes : TreeFamARGFX
HOVERGENA6NJG6
HOGENOMA6NJG6
Homologs : HomoloGeneARGFX
Homology/Alignments : Family Browser (UCSC)ARGFX
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARGFX [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARGFX
dbVarARGFX
ClinVarARGFX
1000_GenomesARGFX 
Exome Variant ServerARGFX
ExAC (Exome Aggregation Consortium)ARGFX (select the gene name)
Genetic variants : HAPMAP503582
Genomic Variants (DGV)ARGFX [DGVbeta]
DECIPHERARGFX [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARGFX 
Mutations
ICGC Data PortalARGFX 
TCGA Data PortalARGFX 
Broad Tumor PortalARGFX
OASIS PortalARGFX [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARGFX  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARGFX
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARGFX
DgiDB (Drug Gene Interaction Database)ARGFX
DoCM (Curated mutations)ARGFX (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARGFX (select a term)
intoGenARGFX
Cancer3DARGFX(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611164   
Orphanet
MedgenARGFX
Genetic Testing Registry ARGFX
NextProtA6NJG6 [Medical]
TSGene503582
GENETestsARGFX
Target ValidationARGFX
Huge Navigator ARGFX [HugePedia]
snp3D : Map Gene to Disease503582
BioCentury BCIQARGFX
ClinGenARGFX
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD503582
Chemical/Pharm GKB GenePA142672588
Clinical trialARGFX
Miscellaneous
canSAR (ICR)ARGFX (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARGFX
EVEXARGFX
GoPubMedARGFX
iHOPARGFX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:37 CEST 2017

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