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ARGLU1 (arginine and glutamate rich 1)

Identity

Alias_symbol (synonym)FLJ10154
Other alias-
HGNC (Hugo) ARGLU1
LocusID (NCBI) 55082
Atlas_Id 52338
Location 13q33.3  [Link to chromosome band 13q33]
Location_base_pair Starts at 106543314 and ends at 106568166 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARGLU1 (13q33.3) / CXCR4 (2q22.1)ARGLU1 (13q33.3) / LPIN1 (2p25.1)ARGLU1 (13q33.3) / NACA (12q13.3)
ARGLU1 (13q33.3) / NAPG (18p11.22)ENOPH1 (4q21.22) / ARGLU1 (13q33.3)PDE5A (4q26) / ARGLU1 (13q33.3)
RPS4Y1 (Yp11.31) / ARGLU1 (13q33.3)SH3GL1 (19p13.3) / ARGLU1 (13q33.3)ARGLU1 13q33.3 / CXCR4 2q22.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARGLU1   25482
Cards
Entrez_Gene (NCBI)ARGLU1  55082  arginine and glutamate rich 1
Aliases
GeneCards (Weizmann)ARGLU1
Ensembl hg19 (Hinxton)ENSG00000134884 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000134884 [Gene_View]  chr13:106543314-106568166 [Contig_View]  ARGLU1 [Vega]
ICGC DataPortalENSG00000134884
TCGA cBioPortalARGLU1
AceView (NCBI)ARGLU1
Genatlas (Paris)ARGLU1
WikiGenes55082
SOURCE (Princeton)ARGLU1
Genetics Home Reference (NIH)ARGLU1
Genomic and cartography
GoldenPath hg38 (UCSC)ARGLU1  -     chr13:106543314-106568166 -  13q33.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARGLU1  -     13q33.3   [Description]    (hg19-Feb_2009)
EnsemblARGLU1 - 13q33.3 [CytoView hg19]  ARGLU1 - 13q33.3 [CytoView hg38]
Mapping of homologs : NCBIARGLU1 [Mapview hg19]  ARGLU1 [Mapview hg38]
OMIM614046   
Gene and transcription
Genbank (Entrez)AA445997 AI623424 AK001016 AK303575 AK304751
RefSeq transcript (Entrez)NM_018011
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARGLU1
Cluster EST : UnigeneHs.508644 [ NCBI ]
CGAP (NCI)Hs.508644
Alternative Splicing GalleryENSG00000134884
Gene ExpressionARGLU1 [ NCBI-GEO ]   ARGLU1 [ EBI - ARRAY_EXPRESS ]   ARGLU1 [ SEEK ]   ARGLU1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARGLU1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55082
GTEX Portal (Tissue expression)ARGLU1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWB6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWB6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWB6
Splice isoforms : SwissVarQ9NWB6
PhosPhoSitePlusQ9NWB6
Domains : Interpro (EBI)ARGLU1   
Domain families : Pfam (Sanger)ARGLU (PF15346)   
Domain families : Pfam (NCBI)pfam15346   
Conserved Domain (NCBI)ARGLU1
DMDM Disease mutations55082
Blocks (Seattle)ARGLU1
SuperfamilyQ9NWB6
Human Protein AtlasENSG00000134884
Peptide AtlasQ9NWB6
HPRD07648
IPIIPI00478834   IPI00844406   IPI00908538   IPI00554462   IPI00642689   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWB6
IntAct (EBI)Q9NWB6
FunCoupENSG00000134884
BioGRIDARGLU1
STRING (EMBL)ARGLU1
ZODIACARGLU1
Ontologies - Pathways
QuickGOQ9NWB6
Ontology : AmiGOprotein binding  nucleoplasm  mitochondrion  transcription, DNA-templated  regulation of transcription, DNA-templated  cadherin binding  
Ontology : EGO-EBIprotein binding  nucleoplasm  mitochondrion  transcription, DNA-templated  regulation of transcription, DNA-templated  cadherin binding  
NDEx NetworkARGLU1
Atlas of Cancer Signalling NetworkARGLU1
Wikipedia pathwaysARGLU1
Orthology - Evolution
OrthoDB55082
GeneTree (enSembl)ENSG00000134884
Phylogenetic Trees/Animal Genes : TreeFamARGLU1
HOVERGENQ9NWB6
HOGENOMQ9NWB6
Homologs : HomoloGeneARGLU1
Homology/Alignments : Family Browser (UCSC)ARGLU1
Gene fusions - Rearrangements
Fusion : MitelmanARGLU1/CXCR4 [13q33.3/2q22.1]  
Fusion: TCGAARGLU1 13q33.3 CXCR4 2q22.1 PRAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARGLU1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARGLU1
dbVarARGLU1
ClinVarARGLU1
1000_GenomesARGLU1 
Exome Variant ServerARGLU1
ExAC (Exome Aggregation Consortium)ARGLU1 (select the gene name)
Genetic variants : HAPMAP55082
Genomic Variants (DGV)ARGLU1 [DGVbeta]
DECIPHERARGLU1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARGLU1 
Mutations
ICGC Data PortalARGLU1 
TCGA Data PortalARGLU1 
Broad Tumor PortalARGLU1
OASIS PortalARGLU1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARGLU1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARGLU1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARGLU1
DgiDB (Drug Gene Interaction Database)ARGLU1
DoCM (Curated mutations)ARGLU1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARGLU1 (select a term)
intoGenARGLU1
Cancer3DARGLU1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614046   
Orphanet
MedgenARGLU1
Genetic Testing Registry ARGLU1
NextProtQ9NWB6 [Medical]
TSGene55082
GENETestsARGLU1
Target ValidationARGLU1
Huge Navigator ARGLU1 [HugePedia]
snp3D : Map Gene to Disease55082
BioCentury BCIQARGLU1
ClinGenARGLU1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55082
Chemical/Pharm GKB GenePA162376869
Clinical trialARGLU1
Miscellaneous
canSAR (ICR)ARGLU1 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARGLU1
EVEXARGLU1
GoPubMedARGLU1
iHOPARGLU1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:14 CEST 2017

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