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ARHGAP11A (Rho GTPase activating protein 11A)

Identity

Alias_symbol (synonym)KIAA0013
Other aliasGAP (1-12)
HGNC (Hugo) ARHGAP11A
LocusID (NCBI) 9824
Atlas_Id 43131
Location 15q13.3  [Link to chromosome band 15q13]
Location_base_pair Starts at 32615144 and ends at 32639937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SRSF11 (1p31.1) / ARHGAP11A (15q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP11A   15783
Cards
Entrez_Gene (NCBI)ARHGAP11A  9824  Rho GTPase activating protein 11A
AliasesGAP
GeneCards (Weizmann)ARHGAP11A
Ensembl hg19 (Hinxton)ENSG00000198826 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198826 [Gene_View]  chr15:32615144-32639937 [Contig_View]  ARHGAP11A [Vega]
ICGC DataPortalENSG00000198826
TCGA cBioPortalARHGAP11A
AceView (NCBI)ARHGAP11A
Genatlas (Paris)ARHGAP11A
WikiGenes9824
SOURCE (Princeton)ARHGAP11A
Genetics Home Reference (NIH)ARHGAP11A
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP11A  -     chr15:32615144-32639937 +  15q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP11A  -     15q13.3   [Description]    (hg19-Feb_2009)
EnsemblARHGAP11A - 15q13.3 [CytoView hg19]  ARHGAP11A - 15q13.3 [CytoView hg38]
Mapping of homologs : NCBIARHGAP11A [Mapview hg19]  ARHGAP11A [Mapview hg38]
OMIM610589   
Gene and transcription
Genbank (Entrez)AK303025 AK316437 BC039563 BC050545 BC063444
RefSeq transcript (Entrez)NM_001286479 NM_001286480 NM_014783 NM_199357
RefSeq genomic (Entrez)NC_000015 NC_018926 NG_051557 NT_187660 NW_011332701 NW_012132920
Consensus coding sequences : CCDS (NCBI)ARHGAP11A
Cluster EST : UnigeneHs.591130 [ NCBI ]
CGAP (NCI)Hs.591130
Alternative Splicing GalleryENSG00000198826
Gene ExpressionARHGAP11A [ NCBI-GEO ]   ARHGAP11A [ EBI - ARRAY_EXPRESS ]   ARHGAP11A [ SEEK ]   ARHGAP11A [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP11A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9824
GTEX Portal (Tissue expression)ARHGAP11A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P4F7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P4F7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P4F7
Splice isoforms : SwissVarQ6P4F7
PhosPhoSitePlusQ6P4F7
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP11A
DMDM Disease mutations9824
Blocks (Seattle)ARHGAP11A
PDB (SRS)3EAP   
PDB (PDBSum)3EAP   
PDB (IMB)3EAP   
PDB (RSDB)3EAP   
Structural Biology KnowledgeBase3EAP   
SCOP (Structural Classification of Proteins)3EAP   
CATH (Classification of proteins structures)3EAP   
SuperfamilyQ6P4F7
Human Protein AtlasENSG00000198826
Peptide AtlasQ6P4F7
HPRD10656
IPIIPI00477330   IPI01014219   IPI00399262   
Protein Interaction databases
DIP (DOE-UCLA)Q6P4F7
IntAct (EBI)Q6P4F7
FunCoupENSG00000198826
BioGRIDARHGAP11A
STRING (EMBL)ARHGAP11A
ZODIACARHGAP11A
Ontologies - Pathways
QuickGOQ6P4F7
Ontology : AmiGOGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP11A
Atlas of Cancer Signalling NetworkARHGAP11A
Wikipedia pathwaysARHGAP11A
Orthology - Evolution
OrthoDB9824
GeneTree (enSembl)ENSG00000198826
Phylogenetic Trees/Animal Genes : TreeFamARHGAP11A
HOVERGENQ6P4F7
HOGENOMQ6P4F7
Homologs : HomoloGeneARHGAP11A
Homology/Alignments : Family Browser (UCSC)ARHGAP11A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP11A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP11A
dbVarARHGAP11A
ClinVarARHGAP11A
1000_GenomesARHGAP11A 
Exome Variant ServerARHGAP11A
ExAC (Exome Aggregation Consortium)ARHGAP11A (select the gene name)
Genetic variants : HAPMAP9824
Genomic Variants (DGV)ARHGAP11A [DGVbeta]
DECIPHERARHGAP11A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP11A 
Mutations
ICGC Data PortalARHGAP11A 
TCGA Data PortalARHGAP11A 
Broad Tumor PortalARHGAP11A
OASIS PortalARHGAP11A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP11A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP11A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP11A
DgiDB (Drug Gene Interaction Database)ARHGAP11A
DoCM (Curated mutations)ARHGAP11A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP11A (select a term)
intoGenARHGAP11A
Cancer3DARHGAP11A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610589   
Orphanet
MedgenARHGAP11A
Genetic Testing Registry ARHGAP11A
NextProtQ6P4F7 [Medical]
TSGene9824
GENETestsARHGAP11A
Huge Navigator ARHGAP11A [HugePedia]
snp3D : Map Gene to Disease9824
BioCentury BCIQARHGAP11A
ClinGenARHGAP11A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9824
Chemical/Pharm GKB GenePA134982615
Clinical trialARHGAP11A
Miscellaneous
canSAR (ICR)ARHGAP11A (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP11A
EVEXARHGAP11A
GoPubMedARHGAP11A
iHOPARHGAP11A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:30 CEST 2017

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