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ARHGAP11B (Rho GTPase activating protein 11B)

Identity

Alias_namesFAM7B1
family with sequence similarity 7, member B1
Alias_symbol (synonym)B'-T
Other alias
HGNC (Hugo) ARHGAP11B
LocusID (NCBI) 89839
Atlas_Id 60459
Location 15q13.2  [Link to chromosome band 15q13]
Location_base_pair Starts at 30626676 and ends at 30638810 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP11B   15782
Cards
Entrez_Gene (NCBI)ARHGAP11B  89839  Rho GTPase activating protein 11B
AliasesB'-T; FAM7B1
GeneCards (Weizmann)ARHGAP11B
Ensembl hg19 (Hinxton)ENSG00000187951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000187951 [Gene_View]  chr15:30626676-30638810 [Contig_View]  ARHGAP11B [Vega]
ICGC DataPortalENSG00000187951
TCGA cBioPortalARHGAP11B
AceView (NCBI)ARHGAP11B
Genatlas (Paris)ARHGAP11B
WikiGenes89839
SOURCE (Princeton)ARHGAP11B
Genetics Home Reference (NIH)ARHGAP11B
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP11B  -     chr15:30626676-30638810 +  15q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP11B  -     15q13.2   [Description]    (hg19-Feb_2009)
EnsemblARHGAP11B - 15q13.2 [CytoView hg19]  ARHGAP11B - 15q13.2 [CytoView hg38]
Mapping of homologs : NCBIARHGAP11B [Mapview hg19]  ARHGAP11B [Mapview hg38]
OMIM616310   
Gene and transcription
Genbank (Entrez)AK310030 AK310319 BC071990 BC105788
RefSeq transcript (Entrez)NM_001039841
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_187660 NW_011332701 NW_012132920
Consensus coding sequences : CCDS (NCBI)ARHGAP11B
Cluster EST : UnigeneHs.739267 [ NCBI ]
CGAP (NCI)Hs.739267
Alternative Splicing GalleryENSG00000187951
Gene ExpressionARHGAP11B [ NCBI-GEO ]   ARHGAP11B [ EBI - ARRAY_EXPRESS ]   ARHGAP11B [ SEEK ]   ARHGAP11B [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP11B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)89839
GTEX Portal (Tissue expression)ARHGAP11B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3KRB8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3KRB8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3KRB8
Splice isoforms : SwissVarQ3KRB8
PhosPhoSitePlusQ3KRB8
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP11B
DMDM Disease mutations89839
Blocks (Seattle)ARHGAP11B
SuperfamilyQ3KRB8
Human Protein AtlasENSG00000187951
Peptide AtlasQ3KRB8
IPIIPI00654746   
Protein Interaction databases
DIP (DOE-UCLA)Q3KRB8
IntAct (EBI)Q3KRB8
FunCoupENSG00000187951
BioGRIDARHGAP11B
STRING (EMBL)ARHGAP11B
ZODIACARHGAP11B
Ontologies - Pathways
QuickGOQ3KRB8
Ontology : AmiGOGTPase activator activity  GTPase activator activity  cytosol  signal transduction  cerebral cortex development  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  cytosol  signal transduction  cerebral cortex development  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP11B
Atlas of Cancer Signalling NetworkARHGAP11B
Wikipedia pathwaysARHGAP11B
Orthology - Evolution
OrthoDB89839
GeneTree (enSembl)ENSG00000187951
Phylogenetic Trees/Animal Genes : TreeFamARHGAP11B
HOVERGENQ3KRB8
HOGENOMQ3KRB8
Homologs : HomoloGeneARHGAP11B
Homology/Alignments : Family Browser (UCSC)ARHGAP11B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP11B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP11B
dbVarARHGAP11B
ClinVarARHGAP11B
1000_GenomesARHGAP11B 
Exome Variant ServerARHGAP11B
ExAC (Exome Aggregation Consortium)ARHGAP11B (select the gene name)
Genetic variants : HAPMAP89839
Genomic Variants (DGV)ARHGAP11B [DGVbeta]
DECIPHERARHGAP11B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP11B 
Mutations
ICGC Data PortalARHGAP11B 
TCGA Data PortalARHGAP11B 
Broad Tumor PortalARHGAP11B
OASIS PortalARHGAP11B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP11B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP11B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP11B
DgiDB (Drug Gene Interaction Database)ARHGAP11B
DoCM (Curated mutations)ARHGAP11B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP11B (select a term)
intoGenARHGAP11B
Cancer3DARHGAP11B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616310   
Orphanet
MedgenARHGAP11B
Genetic Testing Registry ARHGAP11B
NextProtQ3KRB8 [Medical]
TSGene89839
GENETestsARHGAP11B
Target ValidationARHGAP11B
Huge Navigator ARHGAP11B [HugePedia]
snp3D : Map Gene to Disease89839
BioCentury BCIQARHGAP11B
ClinGenARHGAP11B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD89839
Chemical/Pharm GKB GenePA134987257
Clinical trialARHGAP11B
Miscellaneous
canSAR (ICR)ARHGAP11B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP11B
EVEXARHGAP11B
GoPubMedARHGAP11B
iHOPARHGAP11B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:38 CEST 2017

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