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ARHGAP17 (Rho GTPase activating protein 17)

Identity

Other namesMST066
MST110
MSTP038
MSTP066
MSTP110
NADRIN
PP367
PP4534
RICH-1
RICH1
WBP15
HGNC (Hugo) ARHGAP17
LocusID (NCBI) 55114
Location 16p12.1
Location_base_pair Starts at 24930705 and ends at 25026699 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARHGAP17   18239
Cards
Entrez_Gene (NCBI)ARHGAP17  55114  Rho GTPase activating protein 17
GeneCards (Weizmann)ARHGAP17
Ensembl (Hinxton)ENSG00000140750 [Gene_View]  chr16:24930705-25026699 [Contig_View]  ARHGAP17 [Vega]
ICGC DataPortalENSG00000140750
AceView (NCBI)ARHGAP17
Genatlas (Paris)ARHGAP17
WikiGenes55114
SOURCE (Princeton)NM_001006634 NM_018054
Genomic and cartography
GoldenPath (UCSC)ARHGAP17  -  16p12.1   chr16:24930705-25026699 -  16p12.1   [Description]    (hg19-Feb_2009)
EnsemblARHGAP17 - 16p12.1 [CytoView]
Mapping of homologs : NCBIARHGAP17 [Mapview]
OMIM608293   
Gene and transcription
Genbank (Entrez)AF113218 AF163257 AF173885 AF258560 AF258580
RefSeq transcript (Entrez)NM_001006634 NM_018054
RefSeq genomic (Entrez)AC_000148 NC_000016 NC_018927 NT_187260 NW_001838401 NW_004929400
Consensus coding sequences : CCDS (NCBI)ARHGAP17
Cluster EST : UnigeneHs.373793 [ NCBI ]
CGAP (NCI)Hs.373793
Alternative Splicing : Fast-db (Paris)GSHG0011722
Alternative Splicing GalleryENSG00000140750
Gene ExpressionARHGAP17 [ NCBI-GEO ]     ARHGAP17 [ SEEK ]   ARHGAP17 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68EM7 (Uniprot)
NextProtQ68EM7  [Medical]
With graphics : InterProQ68EM7
Splice isoforms : SwissVarQ68EM7 (Swissvar)
Domaine pattern : Prosite (Expaxy)BAR (PS51021)    RHOGAP (PS50238)   
Domains : Interpro (EBI)AH/BAR-dom    BAR_dom    Rho_GTPase_activation_prot    RhoGAP_dom   
Related proteins : CluSTrQ68EM7
Domain families : Pfam (Sanger)BAR (PF03114)    RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam03114    pfam00620   
Domain families : Smart (EMBL)BAR (SM00721)  RhoGAP (SM00324)  
DMDM Disease mutations55114
Blocks (Seattle)Q68EM7
Human Protein AtlasENSG00000140750
Peptide AtlasQ68EM7
HPRD12207
IPIIPI00064767   IPI00386947   IPI00168527   IPI00829687   IPI00829657   IPI00830043   IPI00830020   IPI00910081   IPI01018994   IPI00383177   IPI00383184   IPI00023452   
Protein Interaction databases
DIP (DOE-UCLA)Q68EM7
IntAct (EBI)Q68EM7
FunCoupENSG00000140750
BioGRIDARHGAP17
InParanoidQ68EM7
Interologous Interaction database Q68EM7
IntegromeDBARHGAP17
STRING (EMBL)ARHGAP17
Ontologies - Pathways
Ontology : AmiGOGTPase activator activity  protein binding  cytosol  tight junction  small GTPase mediated signal transduction  membrane  SH3 domain binding  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytosol  tight junction  small GTPase mediated signal transduction  membrane  SH3 domain binding  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Protein Interaction DatabaseARHGAP17
Wikipedia pathwaysARHGAP17
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARHGAP17
SNP (GeneSNP Utah)ARHGAP17
SNP : HGBaseARHGAP17
Genetic variants : HAPMAPARHGAP17
1000_GenomesARHGAP17 
ICGC programENSG00000140750 
CONAN: Copy Number AnalysisARHGAP17 
Somatic Mutations in Cancer : COSMICARHGAP17 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Mutations and Diseases : HGMDARHGAP17
OMIM608293   
MedgenARHGAP17
GENETestsARHGAP17
Disease Genetic AssociationARHGAP17
Huge Navigator ARHGAP17 [HugePedia]  ARHGAP17 [HugeCancerGEM]
Genomic VariantsARHGAP17  ARHGAP17 [DGVbeta]
Exome VariantARHGAP17
dbVarARHGAP17
ClinVarARHGAP17
snp3D : Map Gene to Disease55114
General knowledge
Homologs : HomoloGeneARHGAP17
Homology/Alignments : Family Browser (UCSC)ARHGAP17
Phylogenetic Trees/Animal Genes : TreeFamARHGAP17
Chemical/Protein Interactions : CTD55114
Chemical/Pharm GKB GenePA134908575
Clinical trialARHGAP17
Cancer Resource (Charite)ENSG00000140750
Other databases
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
CoreMineARHGAP17
iHOPARHGAP17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 13 12:32:49 CEST 2014

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