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ARHGAP17 (Rho GTPase activating protein 17)

Identity

Other namesMST066
MST110
MSTP038
MSTP066
MSTP110
NADRIN
PP367
PP4534
RICH-1
RICH1
WBP15
HGNC (Hugo) ARHGAP17
LocusID (NCBI) 55114
Atlas_Id 43134
Location 16p12.1  [Link to chromosome band 16p12]
Location_base_pair Starts at 24930705 and ends at 25026699 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
AFF1 (4q21.3) / ARHGAP17 (16p12.1)ARHGAP17 (16p12.1) / NFIC (19p13.3)CAPRIN1 (11p13) / ARHGAP17 (16p12.1)
FBN1 (15q21.1) / ARHGAP17 (16p12.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP17   18239
Cards
Entrez_Gene (NCBI)ARHGAP17  55114  Rho GTPase activating protein 17
AliasesMST066; MST110; MSTP038; MSTP066; 
MSTP110; NADRIN; PP367; PP4534; RICH-1; RICH1; WBP15
GeneCards (Weizmann)ARHGAP17
Ensembl hg19 (Hinxton)ENSG00000140750 [Gene_View]  chr16:24930705-25026699 [Contig_View]  ARHGAP17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000140750 [Gene_View]  chr16:24930705-25026699 [Contig_View]  ARHGAP17 [Vega]
ICGC DataPortalENSG00000140750
TCGA cBioPortalARHGAP17
AceView (NCBI)ARHGAP17
Genatlas (Paris)ARHGAP17
WikiGenes55114
SOURCE (Princeton)ARHGAP17
Genomic and cartography
GoldenPath hg19 (UCSC)ARHGAP17  -     chr16:24930705-25026699 -  16p12.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARHGAP17  -     16p12.1   [Description]    (hg38-Dec_2013)
EnsemblARHGAP17 - 16p12.1 [CytoView hg19]  ARHGAP17 - 16p12.1 [CytoView hg38]
Mapping of homologs : NCBIARHGAP17 [Mapview hg19]  ARHGAP17 [Mapview hg38]
OMIM608293   
Gene and transcription
Genbank (Entrez)AF113218 AF163257 AF173885 AF258560 AF258580
RefSeq transcript (Entrez)NM_001006634 NM_018054
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_187260 NW_004929400
Consensus coding sequences : CCDS (NCBI)ARHGAP17
Cluster EST : UnigeneHs.373793 [ NCBI ]
CGAP (NCI)Hs.373793
Alternative Splicing GalleryENSG00000140750
Gene ExpressionARHGAP17 [ NCBI-GEO ]   ARHGAP17 [ EBI - ARRAY_EXPRESS ]   ARHGAP17 [ SEEK ]   ARHGAP17 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55114
GTEX Portal (Tissue expression)ARHGAP17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68EM7 (Uniprot)
NextProtQ68EM7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68EM7
Splice isoforms : SwissVarQ68EM7 (Swissvar)
PhosPhoSitePlusQ68EM7
Domaine pattern : Prosite (Expaxy)BAR (PS51021)    RHOGAP (PS50238)   
Domains : Interpro (EBI)AH/BAR-dom    BAR_dom    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)BAR (PF03114)    RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam03114    pfam00620   
Domain families : Smart (EMBL)BAR (SM00721)  RhoGAP (SM00324)  
DMDM Disease mutations55114
Blocks (Seattle)ARHGAP17
SuperfamilyQ68EM7
Human Protein AtlasENSG00000140750
Peptide AtlasQ68EM7
HPRD12207
IPIIPI00064767   IPI00386947   IPI00168527   IPI00829687   IPI00829657   IPI00830043   IPI00830020   IPI00910081   IPI01018994   IPI00383177   IPI00383184   IPI00023452   
Protein Interaction databases
DIP (DOE-UCLA)Q68EM7
IntAct (EBI)Q68EM7
FunCoupENSG00000140750
BioGRIDARHGAP17
STRING (EMBL)ARHGAP17
ZODIACARHGAP17
Ontologies - Pathways
QuickGOQ68EM7
Ontology : AmiGOGTPase activator activity  protein binding  cytosol  plasma membrane  bicellular tight junction  signal transduction  SH3 domain binding  positive regulation of GTPase activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytosol  plasma membrane  bicellular tight junction  signal transduction  SH3 domain binding  positive regulation of GTPase activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP17
Atlas of Cancer Signalling NetworkARHGAP17
Wikipedia pathwaysARHGAP17
Orthology - Evolution
OrthoDB55114
GeneTree (enSembl)ENSG00000140750
Phylogenetic Trees/Animal Genes : TreeFamARHGAP17
Homologs : HomoloGeneARHGAP17
Homology/Alignments : Family Browser (UCSC)ARHGAP17
Gene fusions - Rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerARHGAP17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP17
dbVarARHGAP17
ClinVarARHGAP17
1000_GenomesARHGAP17 
Exome Variant ServerARHGAP17
ExAC (Exome Aggregation Consortium)ARHGAP17 (select the gene name)
Genetic variants : HAPMAP55114
Genomic Variants (DGV)ARHGAP17 [DGVbeta]
Mutations
ICGC Data PortalARHGAP17 
TCGA Data PortalARHGAP17 
Broad Tumor PortalARHGAP17
OASIS PortalARHGAP17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP17 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP17
DgiDB (Drug Gene Interaction Database)ARHGAP17
DoCM (Curated mutations)ARHGAP17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP17 (select a term)
intoGenARHGAP17
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)16:24930705-25026699  ENSG00000140750
CONAN: Copy Number AnalysisARHGAP17 
Mutations and Diseases : HGMDARHGAP17
OMIM608293   
MedgenARHGAP17
Genetic Testing Registry ARHGAP17
NextProtQ68EM7 [Medical]
TSGene55114
GENETestsARHGAP17
Huge Navigator ARHGAP17 [HugePedia]
snp3D : Map Gene to Disease55114
BioCentury BCIQARHGAP17
ClinGenARHGAP17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55114
Chemical/Pharm GKB GenePA134908575
Clinical trialARHGAP17
Miscellaneous
canSAR (ICR)ARHGAP17 (select the gene name)
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP17
EVEXARHGAP17
GoPubMedARHGAP17
iHOPARHGAP17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 19 18:37:10 CEST 2016

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