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ARHGAP22-IT1 (ARHGAP22 intronic transcript 1)

Identity

Alias (NCBI)-
HGNC (Hugo) ARHGAP22-IT1
HGNC Alias symbFLJ35752
HGNC Previous nameARHGAP22 intronic transcript 1 (non-protein coding)
LocusID (NCBI) 100689073
Atlas_Id 60461
Location 10q11.22  [Link to chromosome band 10q11]
Location_base_pair Starts at 48509852 and ends at 48511589 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute



External links

Nomenclature
HGNC (Hugo)ARHGAP22-IT1   42944
Cards
Entrez_Gene (NCBI)ARHGAP22-IT1    ARHGAP22 intronic transcript 1
Aliases
GeneCards (Weizmann)ARHGAP22-IT1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr10:48509852-48511589 [Contig_View]  ARHGAP22-IT1 [Vega]
TCGA cBioPortalARHGAP22-IT1
AceView (NCBI)ARHGAP22-IT1
Genatlas (Paris)ARHGAP22-IT1
SOURCE (Princeton)ARHGAP22-IT1
Genetics Home Reference (NIH)ARHGAP22-IT1
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP22-IT1  -     chr10:48509852-48511589 -  10q11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP22-IT1  -     10q11.22   [Description]    (hg19-Feb_2009)
GoldenPathARHGAP22-IT1 - 10q11.22 [CytoView hg19]  ARHGAP22-IT1 - 10q11.22 [CytoView hg38]
genome Data Viewer NCBIARHGAP22-IT1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AI376619 AK093071 CR737578 DB336202
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGAP22-IT1
Gene ExpressionARHGAP22-IT1 [ NCBI-GEO ]   ARHGAP22-IT1 [ EBI - ARRAY_EXPRESS ]   ARHGAP22-IT1 [ SEEK ]   ARHGAP22-IT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP22-IT1 [ Firebrowse - Broad ]
GenevisibleExpression of ARHGAP22-IT1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100689073
GTEX Portal (Tissue expression)ARHGAP22-IT1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARHGAP22-IT1
Blocks (Seattle)ARHGAP22-IT1
Protein Interaction databases
BioGRIDARHGAP22-IT1
STRING (EMBL)ARHGAP22-IT1
ZODIACARHGAP22-IT1
Ontologies - Pathways
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP22-IT1
EVEXARHGAP22-IT1
GoPubMedARHGAP22-IT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 16:46:08 CET 2020

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