Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARHGAP29 (Rho GTPase activating protein 29)

Identity

Alias_symbol (synonym)PARG1
Other alias
HGNC (Hugo) ARHGAP29
LocusID (NCBI) 9411
Atlas_Id 43141
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 94168907 and ends at 94247760 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ABCD3 (1p21.3) / ARHGAP29 (1p22.1)ARHGAP29 (1p22.1) / COL24A1 (1p22.3)ARHGAP29 (1p22.1) / HACL1 (3p25.1)
ARHGAP29 (1p22.1) / MID2 (Xq22.3)ABCD3 1p21.3 / ARHGAP29 1p22.1ARHGAP29 1p22.1 / MID2 Xq22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP29   30207
Cards
Entrez_Gene (NCBI)ARHGAP29  9411  Rho GTPase activating protein 29
AliasesPARG1
GeneCards (Weizmann)ARHGAP29
Ensembl hg19 (Hinxton)ENSG00000137962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137962 [Gene_View]  chr1:94168907-94247760 [Contig_View]  ARHGAP29 [Vega]
ICGC DataPortalENSG00000137962
TCGA cBioPortalARHGAP29
AceView (NCBI)ARHGAP29
Genatlas (Paris)ARHGAP29
WikiGenes9411
SOURCE (Princeton)ARHGAP29
Genetics Home Reference (NIH)ARHGAP29
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP29  -     chr1:94168907-94247760 -  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP29  -     1p22.1   [Description]    (hg19-Feb_2009)
EnsemblARHGAP29 - 1p22.1 [CytoView hg19]  ARHGAP29 - 1p22.1 [CytoView hg38]
Mapping of homologs : NCBIARHGAP29 [Mapview hg19]  ARHGAP29 [Mapview hg38]
OMIM610496   
Gene and transcription
Genbank (Entrez)AA326126 AB208873 AK092668 AK307733 AK310491
RefSeq transcript (Entrez)NM_001328664 NM_001328665 NM_001328666 NM_001328667 NM_004815
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGAP29
Cluster EST : UnigeneHs.483238 [ NCBI ]
CGAP (NCI)Hs.483238
Alternative Splicing GalleryENSG00000137962
Gene ExpressionARHGAP29 [ NCBI-GEO ]   ARHGAP29 [ EBI - ARRAY_EXPRESS ]   ARHGAP29 [ SEEK ]   ARHGAP29 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP29 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9411
GTEX Portal (Tissue expression)ARHGAP29
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LW3
Splice isoforms : SwissVarQ52LW3
PhosPhoSitePlusQ52LW3
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    RHOGAP (PS50238)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)F_BAR    PE/DAG-bd    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)C1_1 (PF00130)    RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00130    pfam00620   
Domain families : Smart (EMBL)C1 (SM00109)  RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP29
DMDM Disease mutations9411
Blocks (Seattle)ARHGAP29
SuperfamilyQ52LW3
Human Protein AtlasENSG00000137962
Peptide AtlasQ52LW3
HPRD06674
IPIIPI00152011   IPI00646444   
Protein Interaction databases
DIP (DOE-UCLA)Q52LW3
IntAct (EBI)Q52LW3
FunCoupENSG00000137962
BioGRIDARHGAP29
STRING (EMBL)ARHGAP29
ZODIACARHGAP29
Ontologies - Pathways
QuickGOQ52LW3
Ontology : AmiGOGTPase activator activity  cytoplasm  cytosol  Rho protein signal transduction  PDZ domain binding  positive regulation of GTPase activity  metal ion binding  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytoplasm  cytosol  Rho protein signal transduction  PDZ domain binding  positive regulation of GTPase activity  metal ion binding  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP29
Atlas of Cancer Signalling NetworkARHGAP29
Wikipedia pathwaysARHGAP29
Orthology - Evolution
OrthoDB9411
GeneTree (enSembl)ENSG00000137962
Phylogenetic Trees/Animal Genes : TreeFamARHGAP29
HOVERGENQ52LW3
HOGENOMQ52LW3
Homologs : HomoloGeneARHGAP29
Homology/Alignments : Family Browser (UCSC)ARHGAP29
Gene fusions - Rearrangements
Fusion : MitelmanABCD3/ARHGAP29 [1p21.3/1p22.1]  [t(1;1)(p21;p21)]  
Fusion : MitelmanARHGAP29/MID2 [1p22.1/Xq22.3]  [t(X;1)(q22;p21)]  
Fusion: TCGAABCD3 1p21.3 ARHGAP29 1p22.1 BLCA
Fusion: TCGAARHGAP29 1p22.1 MID2 Xq22.3 BLCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP29
dbVarARHGAP29
ClinVarARHGAP29
1000_GenomesARHGAP29 
Exome Variant ServerARHGAP29
ExAC (Exome Aggregation Consortium)ARHGAP29 (select the gene name)
Genetic variants : HAPMAP9411
Genomic Variants (DGV)ARHGAP29 [DGVbeta]
DECIPHERARHGAP29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP29 
Mutations
ICGC Data PortalARHGAP29 
TCGA Data PortalARHGAP29 
Broad Tumor PortalARHGAP29
OASIS PortalARHGAP29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP29  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP29
intOGen PortalARHGAP29
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP29
DgiDB (Drug Gene Interaction Database)ARHGAP29
DoCM (Curated mutations)ARHGAP29 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP29 (select a term)
intoGenARHGAP29
Cancer3DARHGAP29(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610496   
Orphanet
MedgenARHGAP29
Genetic Testing Registry ARHGAP29
NextProtQ52LW3 [Medical]
TSGene9411
GENETestsARHGAP29
Target ValidationARHGAP29
Huge Navigator ARHGAP29 [HugePedia]
snp3D : Map Gene to Disease9411
BioCentury BCIQARHGAP29
ClinGenARHGAP29
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9411
Chemical/Pharm GKB GenePA128394548
Clinical trialARHGAP29
Miscellaneous
canSAR (ICR)ARHGAP29 (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP29
EVEXARHGAP29
GoPubMedARHGAP29
iHOPARHGAP29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:24:17 CEST 2017

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