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ARHGAP29 (Rho GTPase activating protein 29)

Identity

Alias (NCBI)PARG1
HGNC (Hugo) ARHGAP29
HGNC Alias symbPARG1
LocusID (NCBI) 9411
Atlas_Id 43141
Location 1p22.1  [Link to chromosome band 1p22]
Location_base_pair Starts at 94168905 and ends at 94237584 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABCD3 (1p21.3) / ARHGAP29 (1p22.1)ARHGAP29 (1p22.1) / COL24A1 (1p22.3)ARHGAP29 (1p22.1) / HACL1 (3p25.1)
ARHGAP29 (1p22.1) / MID2 (Xq22.3)ABCD3 1p21.3 / ARHGAP29 1p22.1ARHGAP29 1p22.1 / MID2 Xq22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARHGAP29   30207
Cards
Entrez_Gene (NCBI)ARHGAP29    Rho GTPase activating protein 29
AliasesPARG1
GeneCards (Weizmann)ARHGAP29
Ensembl hg19 (Hinxton)ENSG00000137962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000137962 [Gene_View]  ENSG00000137962 [Sequence]  chr1:94168905-94237584 [Contig_View]  ARHGAP29 [Vega]
ICGC DataPortalENSG00000137962
TCGA cBioPortalARHGAP29
AceView (NCBI)ARHGAP29
Genatlas (Paris)ARHGAP29
SOURCE (Princeton)ARHGAP29
Genetics Home Reference (NIH)ARHGAP29
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP29  -     chr1:94168905-94237584 -  1p22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP29  -     1p22.1   [Description]    (hg19-Feb_2009)
GoldenPathARHGAP29 - 1p22.1 [CytoView hg19]  ARHGAP29 - 1p22.1 [CytoView hg38]
ImmunoBaseENSG00000137962
Genome Data Viewer NCBIARHGAP29 [Mapview hg19]  
OMIM610496   
Gene and transcription
Genbank (Entrez)AA326126 AB208873 AK092668 AK307733 AK310491
RefSeq transcript (Entrez)NM_001328664 NM_001328665 NM_001328666 NM_001328667 NM_004815
Consensus coding sequences : CCDS (NCBI)ARHGAP29
Gene ExpressionARHGAP29 [ NCBI-GEO ]   ARHGAP29 [ EBI - ARRAY_EXPRESS ]   ARHGAP29 [ SEEK ]   ARHGAP29 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP29 [ Firebrowse - Broad ]
GenevisibleExpression of ARHGAP29 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9411
GTEX Portal (Tissue expression)ARHGAP29
Human Protein AtlasENSG00000137962-ARHGAP29 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ52LW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ52LW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ52LW3
PhosPhoSitePlusQ52LW3
Domaine pattern : Prosite (Expaxy)F_BAR (PS51741)    RHOGAP (PS50238)    ZF_DAG_PE_1 (PS00479)    ZF_DAG_PE_2 (PS50081)   
Domains : Interpro (EBI)AH/BAR_dom_sf    F_BAR    PE/DAG-bd    Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)C1_1 (PF00130)    RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00130    pfam00620   
Domain families : Smart (EMBL)C1 (SM00109)  RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP29
SuperfamilyQ52LW3
AlphaFold pdb e-kbQ52LW3   
Human Protein Atlas [tissue]ENSG00000137962-ARHGAP29 [tissue]
HPRD06674
Protein Interaction databases
DIP (DOE-UCLA)Q52LW3
IntAct (EBI)Q52LW3
BioGRIDARHGAP29
STRING (EMBL)ARHGAP29
ZODIACARHGAP29
Ontologies - Pathways
QuickGOQ52LW3
Ontology : AmiGOGTPase activator activity  cytoplasm  cytoplasm  cytosol  Rho protein signal transduction  PDZ domain binding  protein-containing complex  metal ion binding  regulation of small GTPase mediated signal transduction  activation of GTPase activity  
Ontology : EGO-EBIGTPase activator activity  cytoplasm  cytoplasm  cytosol  Rho protein signal transduction  PDZ domain binding  protein-containing complex  metal ion binding  regulation of small GTPase mediated signal transduction  activation of GTPase activity  
NDEx NetworkARHGAP29
Atlas of Cancer Signalling NetworkARHGAP29
Wikipedia pathwaysARHGAP29
Orthology - Evolution
OrthoDB9411
GeneTree (enSembl)ENSG00000137962
Phylogenetic Trees/Animal Genes : TreeFamARHGAP29
Homologs : HomoloGeneARHGAP29
Homology/Alignments : Family Browser (UCSC)ARHGAP29
Gene fusions - Rearrangements
Fusion : MitelmanABCD3/ARHGAP29 [1p21.3/1p22.1]  
Fusion : MitelmanARHGAP29/MID2 [1p22.1/Xq22.3]  
Fusion : QuiverARHGAP29
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP29 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP29
dbVarARHGAP29
ClinVarARHGAP29
MonarchARHGAP29
1000_GenomesARHGAP29 
Exome Variant ServerARHGAP29
GNOMAD BrowserENSG00000137962
Varsome BrowserARHGAP29
ACMGARHGAP29 variants
VarityQ52LW3
Genomic Variants (DGV)ARHGAP29 [DGVbeta]
DECIPHERARHGAP29 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP29 
Mutations
ICGC Data PortalARHGAP29 
TCGA Data PortalARHGAP29 
Broad Tumor PortalARHGAP29
OASIS PortalARHGAP29 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP29  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARHGAP29
Mutations and Diseases : HGMDARHGAP29
intOGen PortalARHGAP29
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARHGAP29
DgiDB (Drug Gene Interaction Database)ARHGAP29
DoCM (Curated mutations)ARHGAP29
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP29
Cancer3DARHGAP29
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610496   
Orphanet
DisGeNETARHGAP29
MedgenARHGAP29
Genetic Testing Registry ARHGAP29
NextProtQ52LW3 [Medical]
GENETestsARHGAP29
Target ValidationARHGAP29
Huge Navigator ARHGAP29 [HugePedia]
ClinGenARHGAP29
Clinical trials, drugs, therapy
MyCancerGenomeARHGAP29
Protein Interactions : CTDARHGAP29
Pharm GKB GenePA128394548
PharosQ52LW3
Clinical trialARHGAP29
Miscellaneous
canSAR (ICR)ARHGAP29
HarmonizomeARHGAP29
DataMed IndexARHGAP29
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARHGAP29
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 14:59:57 CEST 2021

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