Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ARHGAP30 (Rho GTPase activating protein 30)

Identity

Alias_symbol (synonym)FLJ00267
Other alias-
HGNC (Hugo) ARHGAP30
LocusID (NCBI) 257106
Atlas_Id 55637
Location 1q23.3  [Link to chromosome band 1q23]
Location_base_pair Starts at 161046942 and ends at 161069970 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)		ARHGAP30 (1q23.3) / ARHGAP30 (1q23.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARHGAP30   27414
Cards
Entrez_Gene (NCBI)ARHGAP30  257106  Rho GTPase activating protein 30
Aliases
GeneCards (Weizmann)ARHGAP30
Ensembl hg19 (Hinxton)ENSG00000186517 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186517 [Gene_View]  chr1:161046942-161069970 [Contig_View]  ARHGAP30 [Vega]
ICGC DataPortalENSG00000186517
TCGA cBioPortalARHGAP30
AceView (NCBI)ARHGAP30
Genatlas (Paris)ARHGAP30
WikiGenes257106
SOURCE (Princeton)ARHGAP30
Genetics Home Reference (NIH)ARHGAP30
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP30  -     chr1:161046942-161069970 -  1q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP30  -     1q23.3   [Description]    (hg19-Feb_2009)
EnsemblARHGAP30 - 1q23.3 [CytoView hg19]  ARHGAP30 - 1q23.3 [CytoView hg38]
Mapping of homologs : NCBIARHGAP30 [Mapview hg19]  ARHGAP30 [Mapview hg38]
OMIM614264   
Gene and transcription
Genbank (Entrez)AA835836 AK126116 AK126163 AK160366 AL832852
RefSeq transcript (Entrez)NM_001025598 NM_001287600 NM_001287602 NM_181720
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGAP30
Cluster EST : UnigeneHs.389374 [ NCBI ]
CGAP (NCI)Hs.389374
Alternative Splicing GalleryENSG00000186517
Gene ExpressionARHGAP30 [ NCBI-GEO ]   ARHGAP30 [ EBI - ARRAY_EXPRESS ]   ARHGAP30 [ SEEK ]   ARHGAP30 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP30 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)257106
GTEX Portal (Tissue expression)ARHGAP30
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6I6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6I6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6I6
Splice isoforms : SwissVarQ7Z6I6
PhosPhoSitePlusQ7Z6I6
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP30
DMDM Disease mutations257106
Blocks (Seattle)ARHGAP30
SuperfamilyQ7Z6I6
Human Protein AtlasENSG00000186517
Peptide AtlasQ7Z6I6
HPRD11250
IPIIPI00830067   IPI00376321   IPI00619938   IPI00829903   IPI00843859   IPI01008783   IPI00974003   IPI00981613   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6I6
IntAct (EBI)Q7Z6I6
FunCoupENSG00000186517
BioGRIDARHGAP30
STRING (EMBL)ARHGAP30
ZODIACARHGAP30
Ontologies - Pathways
QuickGOQ7Z6I6
Ontology : AmiGOGTPase activator activity  GTPase activator activity  cytosol  small GTPase mediated signal transduction  cytoplasmic vesicle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  cytosol  small GTPase mediated signal transduction  cytoplasmic vesicle  intracellular membrane-bounded organelle  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP30
Atlas of Cancer Signalling NetworkARHGAP30
Wikipedia pathwaysARHGAP30
Orthology - Evolution
OrthoDB257106
GeneTree (enSembl)ENSG00000186517
Phylogenetic Trees/Animal Genes : TreeFamARHGAP30
HOVERGENQ7Z6I6
HOGENOMQ7Z6I6
Homologs : HomoloGeneARHGAP30
Homology/Alignments : Family Browser (UCSC)ARHGAP30
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP30 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP30
dbVarARHGAP30
ClinVarARHGAP30
1000_GenomesARHGAP30 
Exome Variant ServerARHGAP30
ExAC (Exome Aggregation Consortium)ARHGAP30 (select the gene name)
Genetic variants : HAPMAP257106
Genomic Variants (DGV)ARHGAP30 [DGVbeta]
DECIPHERARHGAP30 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP30 
Mutations
ICGC Data PortalARHGAP30 
TCGA Data PortalARHGAP30 
Broad Tumor PortalARHGAP30
OASIS PortalARHGAP30 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP30  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP30
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP30
DgiDB (Drug Gene Interaction Database)ARHGAP30
DoCM (Curated mutations)ARHGAP30 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP30 (select a term)
intoGenARHGAP30
Cancer3DARHGAP30(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614264   
Orphanet
MedgenARHGAP30
Genetic Testing Registry ARHGAP30
NextProtQ7Z6I6 [Medical]
TSGene257106
GENETestsARHGAP30
Target ValidationARHGAP30
Huge Navigator ARHGAP30 [HugePedia]
snp3D : Map Gene to Disease257106
BioCentury BCIQARHGAP30
ClinGenARHGAP30
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD257106
Chemical/Pharm GKB GenePA142672585
Clinical trialARHGAP30
Miscellaneous
canSAR (ICR)ARHGAP30 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP30
EVEXARHGAP30
GoPubMedARHGAP30
iHOPARHGAP30
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:57:53 CEST 2017
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