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ARHGAP33 (Rho GTPase activating protein 33)

Identity

Alias_namesSNX26
sorting nexin 26
Alias_symbol (synonym)FLJ39019
TCGAP
Other aliasNOMA-GAP
HGNC (Hugo) ARHGAP33
LocusID (NCBI) 115703
Atlas_Id 60468
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 36266417 and ends at 36279724 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP33   23085
Cards
Entrez_Gene (NCBI)ARHGAP33  115703  Rho GTPase activating protein 33
AliasesNOMA-GAP; SNX26; TCGAP
GeneCards (Weizmann)ARHGAP33
Ensembl hg19 (Hinxton)ENSG00000004777 [Gene_View]  chr19:36266417-36279724 [Contig_View]  ARHGAP33 [Vega]
Ensembl hg38 (Hinxton)ENSG00000004777 [Gene_View]  chr19:36266417-36279724 [Contig_View]  ARHGAP33 [Vega]
ICGC DataPortalENSG00000004777
TCGA cBioPortalARHGAP33
AceView (NCBI)ARHGAP33
Genatlas (Paris)ARHGAP33
WikiGenes115703
SOURCE (Princeton)ARHGAP33
Genetics Home Reference (NIH)ARHGAP33
Genomic and cartography
GoldenPath hg19 (UCSC)ARHGAP33  -     chr19:36266417-36279724 +  19q13.12   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARHGAP33  -     19q13.12   [Description]    (hg38-Dec_2013)
EnsemblARHGAP33 - 19q13.12 [CytoView hg19]  ARHGAP33 - 19q13.12 [CytoView hg38]
Mapping of homologs : NCBIARHGAP33 [Mapview hg19]  ARHGAP33 [Mapview hg38]
OMIM614902   
Gene and transcription
Genbank (Entrez)AK096338 AK127255 AL137579 AY044864 BC014084
RefSeq transcript (Entrez)NM_001172630 NM_052948
RefSeq genomic (Entrez)NC_000019 NC_018930 NT_011109 NW_004929415
Consensus coding sequences : CCDS (NCBI)ARHGAP33
Cluster EST : UnigeneHs.515364 [ NCBI ]
CGAP (NCI)Hs.515364
Alternative Splicing GalleryENSG00000004777
Gene ExpressionARHGAP33 [ NCBI-GEO ]   ARHGAP33 [ EBI - ARRAY_EXPRESS ]   ARHGAP33 [ SEEK ]   ARHGAP33 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP33 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115703
GTEX Portal (Tissue expression)ARHGAP33
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14559   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14559  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14559
Splice isoforms : SwissVarO14559
PhosPhoSitePlusO14559
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)    SH3 (PS50002)   
Domains : Interpro (EBI)Phox    Rho_GTPase_activation_prot    RhoGAP_dom    SH3_domain   
Domain families : Pfam (Sanger)RhoGAP (PF00620)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00620    pfam14604   
Domain families : Smart (EMBL)RhoGAP (SM00324)  SH3 (SM00326)  
Conserved Domain (NCBI)ARHGAP33
DMDM Disease mutations115703
Blocks (Seattle)ARHGAP33
SuperfamilyO14559
Human Protein AtlasENSG00000004777
Peptide AtlasO14559
HPRD15415
IPIIPI00549274   IPI00418896   IPI00607892   IPI00022715   
Protein Interaction databases
DIP (DOE-UCLA)O14559
IntAct (EBI)O14559
FunCoupENSG00000004777
BioGRIDARHGAP33
STRING (EMBL)ARHGAP33
ZODIACARHGAP33
Ontologies - Pathways
QuickGOO14559
Ontology : AmiGOGTPase activator activity  protein binding  cytosol  plasma membrane  small GTPase mediated signal transduction  protein transport  phosphatidylinositol binding  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytosol  plasma membrane  small GTPase mediated signal transduction  protein transport  phosphatidylinositol binding  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP33
Atlas of Cancer Signalling NetworkARHGAP33
Wikipedia pathwaysARHGAP33
Orthology - Evolution
OrthoDB115703
GeneTree (enSembl)ENSG00000004777
Phylogenetic Trees/Animal Genes : TreeFamARHGAP33
HOVERGENO14559
HOGENOMO14559
Homologs : HomoloGeneARHGAP33
Homology/Alignments : Family Browser (UCSC)ARHGAP33
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP33
dbVarARHGAP33
ClinVarARHGAP33
1000_GenomesARHGAP33 
Exome Variant ServerARHGAP33
ExAC (Exome Aggregation Consortium)ARHGAP33 (select the gene name)
Genetic variants : HAPMAP115703
Genomic Variants (DGV)ARHGAP33 [DGVbeta]
DECIPHER (Syndromes)19:36266417-36279724  ENSG00000004777
CONAN: Copy Number AnalysisARHGAP33 
Mutations
ICGC Data PortalARHGAP33 
TCGA Data PortalARHGAP33 
Broad Tumor PortalARHGAP33
OASIS PortalARHGAP33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP33  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP33
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP33
DgiDB (Drug Gene Interaction Database)ARHGAP33
DoCM (Curated mutations)ARHGAP33 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP33 (select a term)
intoGenARHGAP33
Cancer3DARHGAP33(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614902   
Orphanet
MedgenARHGAP33
Genetic Testing Registry ARHGAP33
NextProtO14559 [Medical]
TSGene115703
GENETestsARHGAP33
Huge Navigator ARHGAP33 [HugePedia]
snp3D : Map Gene to Disease115703
BioCentury BCIQARHGAP33
ClinGenARHGAP33
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115703
Chemical/Pharm GKB GenePA165393003
Clinical trialARHGAP33
Miscellaneous
canSAR (ICR)ARHGAP33 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP33
EVEXARHGAP33
GoPubMedARHGAP33
iHOPARHGAP33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:52 CET 2017

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