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ARHGAP33 (Rho GTPase activating protein 33)

Identity

Alias (NCBI)NOMA-GAP
SNX26
TCGAP
HGNC (Hugo) ARHGAP33
HGNC Alias symbFLJ39019
TCGAP
HGNC Previous nameSNX26
HGNC Previous namesorting nexin 26
LocusID (NCBI) 115703
Atlas_Id 60468
Location 19q13.12  [Link to chromosome band 19q13]
Location_base_pair Starts at 35775564 and ends at 35788822 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARHGAP33   23085
Cards
Entrez_Gene (NCBI)ARHGAP33    Rho GTPase activating protein 33
AliasesNOMA-GAP; SNX26; TCGAP
GeneCards (Weizmann)ARHGAP33
Ensembl hg19 (Hinxton)ENSG00000004777 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000004777 [Gene_View]  ENSG00000004777 [Sequence]  chr19:35775564-35788822 [Contig_View]  ARHGAP33 [Vega]
ICGC DataPortalENSG00000004777
TCGA cBioPortalARHGAP33
AceView (NCBI)ARHGAP33
Genatlas (Paris)ARHGAP33
SOURCE (Princeton)ARHGAP33
Genetics Home Reference (NIH)ARHGAP33
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP33  -     chr19:35775564-35788822 +  19q13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP33  -     19q13.12   [Description]    (hg19-Feb_2009)
GoldenPathARHGAP33 - 19q13.12 [CytoView hg19]  ARHGAP33 - 19q13.12 [CytoView hg38]
ImmunoBaseENSG00000004777
Genome Data Viewer NCBIARHGAP33 [Mapview hg19]  
OMIM614902   
Gene and transcription
Genbank (Entrez)AK096338 AK127255 AL137579 AY044864 BC014084
RefSeq transcript (Entrez)NM_001172630 NM_001366178 NM_052948
Consensus coding sequences : CCDS (NCBI)ARHGAP33
Gene ExpressionARHGAP33 [ NCBI-GEO ]   ARHGAP33 [ EBI - ARRAY_EXPRESS ]   ARHGAP33 [ SEEK ]   ARHGAP33 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP33 [ Firebrowse - Broad ]
GenevisibleExpression of ARHGAP33 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115703
GTEX Portal (Tissue expression)ARHGAP33
Human Protein AtlasENSG00000004777-ARHGAP33 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14559   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO14559  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO14559
PhosPhoSitePlusO14559
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)    SH3 (PS50002)   
Domains : Interpro (EBI)ARHGAP33    PX_dom_sf    Rho_GTPase_activation_prot    RhoGAP_dom    SH3-like_dom_sf    SH3_domain   
Domain families : Pfam (Sanger)RhoGAP (PF00620)    SH3_9 (PF14604)   
Domain families : Pfam (NCBI)pfam00620    pfam14604   
Domain families : Smart (EMBL)RhoGAP (SM00324)  SH3 (SM00326)  
Conserved Domain (NCBI)ARHGAP33
SuperfamilyO14559
AlphaFold pdb e-kbO14559   
Human Protein Atlas [tissue]ENSG00000004777-ARHGAP33 [tissue]
HPRD15415
Protein Interaction databases
DIP (DOE-UCLA)O14559
IntAct (EBI)O14559
BioGRIDARHGAP33
STRING (EMBL)ARHGAP33
ZODIACARHGAP33
Ontologies - Pathways
QuickGOO14559
Ontology : AmiGOGTPase activator activity  protein binding  cytoplasm  cytosol  plasma membrane  small GTPase mediated signal transduction  response to toxic substance  protein transport  protein kinase binding  protein-containing complex  phosphatidylinositol binding  dendritic spine  regulation of catalytic activity  regulation of small GTPase mediated signal transduction  regulation of dendritic spine morphogenesis  
Ontology : EGO-EBIGTPase activator activity  protein binding  cytoplasm  cytosol  plasma membrane  small GTPase mediated signal transduction  response to toxic substance  protein transport  protein kinase binding  protein-containing complex  phosphatidylinositol binding  dendritic spine  regulation of catalytic activity  regulation of small GTPase mediated signal transduction  regulation of dendritic spine morphogenesis  
NDEx NetworkARHGAP33
Atlas of Cancer Signalling NetworkARHGAP33
Wikipedia pathwaysARHGAP33
Orthology - Evolution
OrthoDB115703
GeneTree (enSembl)ENSG00000004777
Phylogenetic Trees/Animal Genes : TreeFamARHGAP33
Homologs : HomoloGeneARHGAP33
Homology/Alignments : Family Browser (UCSC)ARHGAP33
Gene fusions - Rearrangements
Fusion : QuiverARHGAP33
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP33 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP33
dbVarARHGAP33
ClinVarARHGAP33
MonarchARHGAP33
1000_GenomesARHGAP33 
Exome Variant ServerARHGAP33
GNOMAD BrowserENSG00000004777
Varsome BrowserARHGAP33
ACMGARHGAP33 variants
VarityO14559
Genomic Variants (DGV)ARHGAP33 [DGVbeta]
DECIPHERARHGAP33 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP33 
Mutations
ICGC Data PortalARHGAP33 
TCGA Data PortalARHGAP33 
Broad Tumor PortalARHGAP33
OASIS PortalARHGAP33 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP33  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARHGAP33
Mutations and Diseases : HGMDARHGAP33
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARHGAP33
DgiDB (Drug Gene Interaction Database)ARHGAP33
DoCM (Curated mutations)ARHGAP33
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP33
Cancer3DARHGAP33
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614902   
Orphanet
DisGeNETARHGAP33
MedgenARHGAP33
Genetic Testing Registry ARHGAP33
NextProtO14559 [Medical]
GENETestsARHGAP33
Target ValidationARHGAP33
Huge Navigator ARHGAP33 [HugePedia]
ClinGenARHGAP33
Clinical trials, drugs, therapy
MyCancerGenomeARHGAP33
Protein Interactions : CTDARHGAP33
Pharm GKB GenePA165393003
PharosO14559
Clinical trialARHGAP33
Miscellaneous
canSAR (ICR)ARHGAP33
HarmonizomeARHGAP33
DataMed IndexARHGAP33
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARHGAP33
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:28 CEST 2021

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