Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARHGAP36 (Rho GTPase activating protein 36)

Identity

Alias_symbol (synonym)FLJ30058
Other alias-
HGNC (Hugo) ARHGAP36
LocusID (NCBI) 158763
Atlas_Id 55013
Location Xq26.1  [Link to chromosome band Xq26]
Location_base_pair Starts at 130192216 and ends at 130223859 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD99L2 (Xq28) / ARHGAP36 (Xq26.1)CD99L2 Xq28 / ARHGAP36 Xq26.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP36   26388
Cards
Entrez_Gene (NCBI)ARHGAP36  158763  Rho GTPase activating protein 36
Aliases
GeneCards (Weizmann)ARHGAP36
Ensembl hg19 (Hinxton)ENSG00000147256 [Gene_View]  chrX:130192216-130223859 [Contig_View]  ARHGAP36 [Vega]
Ensembl hg38 (Hinxton)ENSG00000147256 [Gene_View]  chrX:130192216-130223859 [Contig_View]  ARHGAP36 [Vega]
ICGC DataPortalENSG00000147256
TCGA cBioPortalARHGAP36
AceView (NCBI)ARHGAP36
Genatlas (Paris)ARHGAP36
WikiGenes158763
SOURCE (Princeton)ARHGAP36
Genetics Home Reference (NIH)ARHGAP36
Genomic and cartography
GoldenPath hg19 (UCSC)ARHGAP36  -     chrX:130192216-130223859 +  Xq26.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARHGAP36  -     Xq26.1   [Description]    (hg38-Dec_2013)
EnsemblARHGAP36 - Xq26.1 [CytoView hg19]  ARHGAP36 - Xq26.1 [CytoView hg38]
Mapping of homologs : NCBIARHGAP36 [Mapview hg19]  ARHGAP36 [Mapview hg38]
OMIM300937   
Gene and transcription
Genbank (Entrez)AA405456 AK054620 AK128203 AK294274 AK296748
RefSeq transcript (Entrez)NM_001282607 NM_144967
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011786 NW_004929446
Consensus coding sequences : CCDS (NCBI)ARHGAP36
Cluster EST : UnigeneHs.22905 [ NCBI ]
CGAP (NCI)Hs.22905
Alternative Splicing GalleryENSG00000147256
Gene ExpressionARHGAP36 [ NCBI-GEO ]   ARHGAP36 [ EBI - ARRAY_EXPRESS ]   ARHGAP36 [ SEEK ]   ARHGAP36 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)158763
GTEX Portal (Tissue expression)ARHGAP36
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZRI8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZRI8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZRI8
Splice isoforms : SwissVarQ6ZRI8
PhosPhoSitePlusQ6ZRI8
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP36
DMDM Disease mutations158763
Blocks (Seattle)ARHGAP36
SuperfamilyQ6ZRI8
Human Protein AtlasENSG00000147256
Peptide AtlasQ6ZRI8
HPRD06547
IPIIPI00289435   IPI00643199   IPI00642514   IPI00964863   IPI00965160   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZRI8
IntAct (EBI)Q6ZRI8
FunCoupENSG00000147256
BioGRIDARHGAP36
STRING (EMBL)ARHGAP36
ZODIACARHGAP36
Ontologies - Pathways
QuickGOQ6ZRI8
Ontology : AmiGOGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP36
Atlas of Cancer Signalling NetworkARHGAP36
Wikipedia pathwaysARHGAP36
Orthology - Evolution
OrthoDB158763
GeneTree (enSembl)ENSG00000147256
Phylogenetic Trees/Animal Genes : TreeFamARHGAP36
HOVERGENQ6ZRI8
HOGENOMQ6ZRI8
Homologs : HomoloGeneARHGAP36
Homology/Alignments : Family Browser (UCSC)ARHGAP36
Gene fusions - Rearrangements
Fusion : MitelmanCD99L2/ARHGAP36 [Xq28/Xq26.1]  [t(X;X)(q26;q28)]  
Fusion: TCGACD99L2 Xq28 ARHGAP36 Xq26.1 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP36
dbVarARHGAP36
ClinVarARHGAP36
1000_GenomesARHGAP36 
Exome Variant ServerARHGAP36
ExAC (Exome Aggregation Consortium)ARHGAP36 (select the gene name)
Genetic variants : HAPMAP158763
Genomic Variants (DGV)ARHGAP36 [DGVbeta]
DECIPHER (Syndromes)X:130192216-130223859  ENSG00000147256
CONAN: Copy Number AnalysisARHGAP36 
Mutations
ICGC Data PortalARHGAP36 
TCGA Data PortalARHGAP36 
Broad Tumor PortalARHGAP36
OASIS PortalARHGAP36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP36  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP36
DgiDB (Drug Gene Interaction Database)ARHGAP36
DoCM (Curated mutations)ARHGAP36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP36 (select a term)
intoGenARHGAP36
Cancer3DARHGAP36(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300937   
Orphanet
MedgenARHGAP36
Genetic Testing Registry ARHGAP36
NextProtQ6ZRI8 [Medical]
TSGene158763
GENETestsARHGAP36
Huge Navigator ARHGAP36 [HugePedia]
snp3D : Map Gene to Disease158763
BioCentury BCIQARHGAP36
ClinGenARHGAP36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD158763
Chemical/Pharm GKB GenePA165756384
Clinical trialARHGAP36
Miscellaneous
canSAR (ICR)ARHGAP36 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP36
EVEXARHGAP36
GoPubMedARHGAP36
iHOPARHGAP36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:56:23 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.