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ARHGAP40 (Rho GTPase activating protein 40)

Identity

Alias_namesC20orf95
chromosome 20 open reading frame 95
Alias_symbol (synonym)dJ1100H13.4
Other alias
HGNC (Hugo) ARHGAP40
LocusID (NCBI) 343578
Atlas_Id 60471
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38601934 and ends at 38650652 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
NECAB3 (20q11.22) / ARHGAP40 (20q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP40   16226
Cards
Entrez_Gene (NCBI)ARHGAP40  343578  Rho GTPase activating protein 40
AliasesC20orf95; dJ1100H13.4
GeneCards (Weizmann)ARHGAP40
Ensembl hg19 (Hinxton)ENSG00000124143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000124143 [Gene_View]  chr20:38601934-38650652 [Contig_View]  ARHGAP40 [Vega]
ICGC DataPortalENSG00000124143
TCGA cBioPortalARHGAP40
AceView (NCBI)ARHGAP40
Genatlas (Paris)ARHGAP40
WikiGenes343578
SOURCE (Princeton)ARHGAP40
Genetics Home Reference (NIH)ARHGAP40
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP40  -     chr20:38601934-38650652 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP40  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblARHGAP40 - 20q11.23 [CytoView hg19]  ARHGAP40 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBIARHGAP40 [Mapview hg19]  ARHGAP40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001164431
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGAP40
Cluster EST : UnigeneHs.451997 [ NCBI ]
CGAP (NCI)Hs.451997
Alternative Splicing GalleryENSG00000124143
Gene ExpressionARHGAP40 [ NCBI-GEO ]   ARHGAP40 [ EBI - ARRAY_EXPRESS ]   ARHGAP40 [ SEEK ]   ARHGAP40 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)343578
GTEX Portal (Tissue expression)ARHGAP40
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5TG30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5TG30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5TG30
Splice isoforms : SwissVarQ5TG30
PhosPhoSitePlusQ5TG30
Domaine pattern : Prosite (Expaxy)RHOGAP (PS50238)   
Domains : Interpro (EBI)Rho_GTPase_activation_prot    RhoGAP_dom   
Domain families : Pfam (Sanger)RhoGAP (PF00620)   
Domain families : Pfam (NCBI)pfam00620   
Domain families : Smart (EMBL)RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP40
DMDM Disease mutations343578
Blocks (Seattle)ARHGAP40
SuperfamilyQ5TG30
Human Protein AtlasENSG00000124143
Peptide AtlasQ5TG30
IPIIPI00943885   IPI00514052   IPI00793056   
Protein Interaction databases
DIP (DOE-UCLA)Q5TG30
IntAct (EBI)Q5TG30
FunCoupENSG00000124143
BioGRIDARHGAP40
STRING (EMBL)ARHGAP40
ZODIACARHGAP40
Ontologies - Pathways
QuickGOQ5TG30
Ontology : AmiGOGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  cytosol  signal transduction  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP40
Atlas of Cancer Signalling NetworkARHGAP40
Wikipedia pathwaysARHGAP40
Orthology - Evolution
OrthoDB343578
GeneTree (enSembl)ENSG00000124143
Phylogenetic Trees/Animal Genes : TreeFamARHGAP40
HOVERGENQ5TG30
HOGENOMQ5TG30
Homologs : HomoloGeneARHGAP40
Homology/Alignments : Family Browser (UCSC)ARHGAP40
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP40 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP40
dbVarARHGAP40
ClinVarARHGAP40
1000_GenomesARHGAP40 
Exome Variant ServerARHGAP40
ExAC (Exome Aggregation Consortium)ARHGAP40 (select the gene name)
Genetic variants : HAPMAP343578
Genomic Variants (DGV)ARHGAP40 [DGVbeta]
DECIPHERARHGAP40 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP40 
Mutations
ICGC Data PortalARHGAP40 
TCGA Data PortalARHGAP40 
Broad Tumor PortalARHGAP40
OASIS PortalARHGAP40 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP40  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP40
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP40
DgiDB (Drug Gene Interaction Database)ARHGAP40
DoCM (Curated mutations)ARHGAP40 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP40 (select a term)
intoGenARHGAP40
Cancer3DARHGAP40(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARHGAP40
Genetic Testing Registry ARHGAP40
NextProtQ5TG30 [Medical]
TSGene343578
GENETestsARHGAP40
Target ValidationARHGAP40
Huge Navigator ARHGAP40 [HugePedia]
snp3D : Map Gene to Disease343578
BioCentury BCIQARHGAP40
ClinGenARHGAP40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD343578
Chemical/Pharm GKB GenePA25802
Clinical trialARHGAP40
Miscellaneous
canSAR (ICR)ARHGAP40 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP40
EVEXARHGAP40
GoPubMedARHGAP40
iHOPARHGAP40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:40 CEST 2017

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