Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARHGAP9 (Rho GTPase activating protein 9)

Identity

Alias_symbol (synonym)MGC1295
10C
Other aliasRGL1
HGNC (Hugo) ARHGAP9
LocusID (NCBI) 64333
Atlas_Id 43143
Location 12q13.3  [Link to chromosome band 12q13]
Location_base_pair Starts at 57472255 and ends at 57478198 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGAP9 (12q13.3) / AVIL (12q14.1)ARHGAP9 (12q13.3) / MARS (12q13.3)GNL3 (3p21.1) / ARHGAP9 (12q13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGAP9   14130
Cards
Entrez_Gene (NCBI)ARHGAP9  64333  Rho GTPase activating protein 9
Aliases10C; RGL1
GeneCards (Weizmann)ARHGAP9
Ensembl hg19 (Hinxton)ENSG00000123329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123329 [Gene_View]  chr12:57472255-57478198 [Contig_View]  ARHGAP9 [Vega]
ICGC DataPortalENSG00000123329
TCGA cBioPortalARHGAP9
AceView (NCBI)ARHGAP9
Genatlas (Paris)ARHGAP9
WikiGenes64333
SOURCE (Princeton)ARHGAP9
Genetics Home Reference (NIH)ARHGAP9
Genomic and cartography
GoldenPath hg38 (UCSC)ARHGAP9  -     chr12:57472255-57478198 -  12q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARHGAP9  -     12q13.3   [Description]    (hg19-Feb_2009)
EnsemblARHGAP9 - 12q13.3 [CytoView hg19]  ARHGAP9 - 12q13.3 [CytoView hg38]
Mapping of homologs : NCBIARHGAP9 [Mapview hg19]  ARHGAP9 [Mapview hg38]
OMIM610576   
Gene and transcription
Genbank (Entrez)AB030239 AB051853 AF161339 AK057573 AK092763
RefSeq transcript (Entrez)NM_001080156 NM_001080157 NM_001319850 NM_001319851 NM_001319852 NM_032496
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARHGAP9
Cluster EST : UnigeneHs.437126 [ NCBI ]
CGAP (NCI)Hs.437126
Alternative Splicing GalleryENSG00000123329
Gene ExpressionARHGAP9 [ NCBI-GEO ]   ARHGAP9 [ EBI - ARRAY_EXPRESS ]   ARHGAP9 [ SEEK ]   ARHGAP9 [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGAP9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64333
GTEX Portal (Tissue expression)ARHGAP9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BRR9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BRR9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BRR9
Splice isoforms : SwissVarQ9BRR9
PhosPhoSitePlusQ9BRR9
Domaine pattern : Prosite (Expaxy)PH_DOMAIN (PS50003)    RHOGAP (PS50238)    SH3 (PS50002)    WW_DOMAIN_2 (PS50020)   
Domains : Interpro (EBI)PH_dom-like    PH_domain    Rho_GTPase_activation_prot    RhoGAP_dom    SH3_domain    WW_dom   
Domain families : Pfam (Sanger)PH (PF00169)    RhoGAP (PF00620)    SH3_1 (PF00018)   
Domain families : Pfam (NCBI)pfam00169    pfam00620    pfam00018   
Domain families : Smart (EMBL)PH (SM00233)  RhoGAP (SM00324)  
Conserved Domain (NCBI)ARHGAP9
DMDM Disease mutations64333
Blocks (Seattle)ARHGAP9
PDB (SRS)2P0D    2P0F    2P0H   
PDB (PDBSum)2P0D    2P0F    2P0H   
PDB (IMB)2P0D    2P0F    2P0H   
PDB (RSDB)2P0D    2P0F    2P0H   
Structural Biology KnowledgeBase2P0D    2P0F    2P0H   
SCOP (Structural Classification of Proteins)2P0D    2P0F    2P0H   
CATH (Classification of proteins structures)2P0D    2P0F    2P0H   
SuperfamilyQ9BRR9
Human Protein AtlasENSG00000123329
Peptide AtlasQ9BRR9
HPRD06449
IPIIPI00442053   IPI00414939   IPI00798378   IPI01018902   IPI01022000   IPI01025636   IPI01021631   IPI01022628   IPI01025691   IPI01022331   IPI01022280   IPI01020839   IPI00939640   IPI00872303   IPI00793722   
Protein Interaction databases
DIP (DOE-UCLA)Q9BRR9
IntAct (EBI)Q9BRR9
FunCoupENSG00000123329
BioGRIDARHGAP9
STRING (EMBL)ARHGAP9
ZODIACARHGAP9
Ontologies - Pathways
QuickGOQ9BRR9
Ontology : AmiGOGTPase activator activity  GTPase activator activity  protein binding  phosphatidylinositol-3,4,5-trisphosphate binding  extracellular region  cytosol  signal transduction  secretory granule lumen  neutrophil degranulation  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIGTPase activator activity  GTPase activator activity  protein binding  phosphatidylinositol-3,4,5-trisphosphate binding  extracellular region  cytosol  signal transduction  secretory granule lumen  neutrophil degranulation  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
NDEx NetworkARHGAP9
Atlas of Cancer Signalling NetworkARHGAP9
Wikipedia pathwaysARHGAP9
Orthology - Evolution
OrthoDB64333
GeneTree (enSembl)ENSG00000123329
Phylogenetic Trees/Animal Genes : TreeFamARHGAP9
HOVERGENQ9BRR9
HOGENOMQ9BRR9
Homologs : HomoloGeneARHGAP9
Homology/Alignments : Family Browser (UCSC)ARHGAP9
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGAP9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGAP9
dbVarARHGAP9
ClinVarARHGAP9
1000_GenomesARHGAP9 
Exome Variant ServerARHGAP9
ExAC (Exome Aggregation Consortium)ARHGAP9 (select the gene name)
Genetic variants : HAPMAP64333
Genomic Variants (DGV)ARHGAP9 [DGVbeta]
DECIPHERARHGAP9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARHGAP9 
Mutations
ICGC Data PortalARHGAP9 
TCGA Data PortalARHGAP9 
Broad Tumor PortalARHGAP9
OASIS PortalARHGAP9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGAP9  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGAP9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGAP9
DgiDB (Drug Gene Interaction Database)ARHGAP9
DoCM (Curated mutations)ARHGAP9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGAP9 (select a term)
intoGenARHGAP9
Cancer3DARHGAP9(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610576   
Orphanet
MedgenARHGAP9
Genetic Testing Registry ARHGAP9
NextProtQ9BRR9 [Medical]
TSGene64333
GENETestsARHGAP9
Target ValidationARHGAP9
Huge Navigator ARHGAP9 [HugePedia]
snp3D : Map Gene to Disease64333
BioCentury BCIQARHGAP9
ClinGenARHGAP9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64333
Chemical/Pharm GKB GenePA24962
Clinical trialARHGAP9
Miscellaneous
canSAR (ICR)ARHGAP9 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGAP9
EVEXARHGAP9
GoPubMedARHGAP9
iHOPARHGAP9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:24:19 CEST 2017

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