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ARHGDIB (Rho GDP dissociation inhibitor (GDI) beta)

Identity

Other namesD4
GDIA2
GDID4
LYGDI
Ly-GDI
RAP1GN1
RhoGDI2
HGNC (Hugo) ARHGDIB
LocusID (NCBI) 397
Location 12p12.3
Location_base_pair Starts at 15094950 and ends at 15114562 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARHGDIB   679
Entrez_Gene (NCBI)ARHGDIB  397  Rho GDP dissociation inhibitor (GDI) beta
Cards
GeneCards (Weizmann)ARHGDIB
Ensembl (Hinxton)ENSG00000111348 [Gene_View]  chr12:15094950-15114562 [Contig_View]  ARHGDIB [Vega]
AceView (NCBI)ARHGDIB
Genatlas (Paris)ARHGDIB
SOURCE (Stanford)NM_001175
Genomic and cartography
GoldenPath (UCSC)ARHGDIB  -  12p12.3   chr12:15094950-15114562 -  12p12.3   [Description]    (hg19-Feb_2009)
EnsemblARHGDIB - 12p12.3 [CytoView]
Mapping of homologs : NCBIARHGDIB [Mapview]
OMIM602843   
Gene and transcription
Genbank (Entrez)AA143425 AB451315 AB451445 AF498927 AK311807
RefSeq transcript (SRS)NM_001175
RefSeq transcript (Entrez)NM_001175
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004078074
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_009714 NW_001838052 NW_004078074
Consensus coding sequences : CCDS (NCBI)ARHGDIB
Cluster EST : UnigeneHs.504877 [ SRS ] Hs.504877 [ NCBI ]
CGAP (NCI)Hs.504877
Alternative Splicing : Fast-db (Paris)GSHG0007307
Alternative Splicing GalleryENSG00000111348
Gene ExpressionARHGDIB [ NCBI-GEO ]   ARHGDIB [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52566 (SRS) P52566 (Uniprot)
NextProtP52566
With graphics : InterProP52566
Splice isoforms : SwissVarP52566(Swissvar)
Domains : Interpro (SRS)Ig_E-set    Rho_GDI    RhoGDI_domain   
Domains : Interpro (EBI)Ig_E-set    Rho_GDI    RhoGDI_domain   
Related proteins : CluSTrP52566
Domain families : Pfam (SRS)Rho_GDI (PF02115)   
Domain families : Pfam (Sanger)Rho_GDI (PF02115)   
Domain families : Pfam (NCBI)pfam02115   
DMDM397
Blocks (Seattle)P52566
PDB (SRS)1DS6   
PDB (PDBSum)1DS6   
PDB (IMB)1DS6   
PDB (RSDB)1DS6   
Human Protein AtlasENSG00000111348
HPRD04162
IPIIPI00003817   IPI01015187   IPI01011820   IPI01013112   IPI01012413   
Protein Interaction databases
DIP (DOE-UCLA)P52566
IntAct (EBI)P52566
FunCoupENSG00000111348
REACTOMEARHGDIB
Protein Interaction Database397
BioGRIDARHGDIB
InParanoidP52566
Interologous Interaction database P52566
IntegromeDBARHGDIB
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARHGDIB
SNP (GeneSNP Utah)ARHGDIB
SNP : HGBaseARHGDIB
Genetic variants : HAPMAPARHGDIB
Somatic Mutations in Cancer : COSMICARHGDIB 
CONAN: Copy Number AnalysisARHGDIB 
Mutations and Diseases : HGMDARHGDIB
OMIM602843   
GENETests602843   
Disease Genetic AssociationARHGDIB
Huge Navigator ARHGDIB [HugePedia]  ARHGDIB [HugeCancerGEM]
Genomic VariantsARHGDIB  ARHGDIB [DGVbeta]
snp3D : Map Gene to Disease397
General knowledge
Homologs : HomoloGeneARHGDIB
Homology/Alignments : Family Browser (UCSC)ARHGDIB
Phylogenetic Trees/Animal Genes : TreeFamARHGDIB
Chemical/Protein Interactions : CTD397
Chemical/Pharm GKB GenePA24964
Clinical trialARHGDIB
Cancer Resource (Charite)ENSG00000111348
Ontology : AmiGORho GDP-dissociation inhibitor activity  GTPase activator activity  cytoplasm  cytosol  cytoskeleton  cellular component movement  immune response  negative regulation of cell adhesion  small GTPase mediated signal transduction  Rho protein signal transduction  multicellular organismal development  cytoplasmic membrane-bounded vesicle  actin cytoskeleton organization  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIRho GDP-dissociation inhibitor activity  GTPase activator activity  cytoplasm  cytosol  cytoskeleton  cellular component movement  immune response  negative regulation of cell adhesion  small GTPase mediated signal transduction  Rho protein signal transduction  multicellular organismal development  cytoplasmic membrane-bounded vesicle  actin cytoskeleton organization  regulation of small GTPase mediated signal transduction  
Pathways : BIOCARTAFAS signaling pathway ( CD95 ) [Genes]    HIV-I Nef: negative effector of Fas and TNF [Genes]    TNFR1 Signaling Pathway [Genes]    Caspase Cascade in Apoptosis [Genes]    D4-GDI Signaling Pathway [Genes]   
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
PubGeneARHGDIB
iHOPARHGDIB
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:30:11 CEST 2013
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