Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARHGDIG (Rho GDP dissociation inhibitor gamma)

Identity

Alias_namesRho GDP dissociation inhibitor (GDI) gamma
Alias_symbol (synonym)RHOGDI-3
Other alias
HGNC (Hugo) ARHGDIG
LocusID (NCBI) 398
Atlas_Id 54133
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 330606 and ends at 333003 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASTN2 (9q33.1) / ARHGDIG (16p13.3)ASTN2 9q33.1 / ARHGDIG 16p13.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARHGDIG   680
Cards
Entrez_Gene (NCBI)ARHGDIG  398  Rho GDP dissociation inhibitor gamma
AliasesRHOGDI-3
GeneCards (Weizmann)ARHGDIG
Ensembl hg19 (Hinxton)ENSG00000242173 [Gene_View]  chr16:330606-333003 [Contig_View]  ARHGDIG [Vega]
Ensembl hg38 (Hinxton)ENSG00000242173 [Gene_View]  chr16:330606-333003 [Contig_View]  ARHGDIG [Vega]
ICGC DataPortalENSG00000242173
TCGA cBioPortalARHGDIG
AceView (NCBI)ARHGDIG
Genatlas (Paris)ARHGDIG
WikiGenes398
SOURCE (Princeton)ARHGDIG
Genetics Home Reference (NIH)ARHGDIG
Genomic and cartography
GoldenPath hg19 (UCSC)ARHGDIG  -     chr16:330606-333003 +  16p13.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARHGDIG  -     16p13.3   [Description]    (hg38-Dec_2013)
EnsemblARHGDIG - 16p13.3 [CytoView hg19]  ARHGDIG - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBIARHGDIG [Mapview hg19]  ARHGDIG [Mapview hg38]
OMIM602844   
Gene and transcription
Genbank (Entrez)AB593111 AF498928 BC047699 BM662457 BU732723
RefSeq transcript (Entrez)NM_001176
RefSeq genomic (Entrez)NC_000016 NC_018927 NT_010393 NW_004929400
Consensus coding sequences : CCDS (NCBI)ARHGDIG
Cluster EST : UnigeneHs.647388 [ NCBI ]
CGAP (NCI)Hs.647388
Alternative Splicing GalleryENSG00000242173
Gene ExpressionARHGDIG [ NCBI-GEO ]   ARHGDIG [ EBI - ARRAY_EXPRESS ]   ARHGDIG [ SEEK ]   ARHGDIG [ MEM ]
Gene Expression Viewer (FireBrowse)ARHGDIG [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)398
GTEX Portal (Tissue expression)ARHGDIG
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99819   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99819  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99819
Splice isoforms : SwissVarQ99819
PhosPhoSitePlusQ99819
Domains : Interpro (EBI)Ig_E-set    Rho_GDI    RhoGDI_domain   
Domain families : Pfam (Sanger)Rho_GDI (PF02115)   
Domain families : Pfam (NCBI)pfam02115   
Conserved Domain (NCBI)ARHGDIG
DMDM Disease mutations398
Blocks (Seattle)ARHGDIG
SuperfamilyQ99819
Human Protein AtlasENSG00000242173
Peptide AtlasQ99819
HPRD04163
IPIIPI00018435   IPI00607817   IPI00924647   IPI00793770   IPI00795734   IPI00980137   
Protein Interaction databases
DIP (DOE-UCLA)Q99819
IntAct (EBI)Q99819
FunCoupENSG00000242173
BioGRIDARHGDIG
STRING (EMBL)ARHGDIG
ZODIACARHGDIG
Ontologies - Pathways
QuickGOQ99819
Ontology : AmiGORho GDP-dissociation inhibitor activity  GTPase activator activity  protein binding  cytosol  negative regulation of cell adhesion  Rho protein signal transduction  membrane  cytoplasmic, membrane-bounded vesicle  regulation of protein localization  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Ontology : EGO-EBIRho GDP-dissociation inhibitor activity  GTPase activator activity  protein binding  cytosol  negative regulation of cell adhesion  Rho protein signal transduction  membrane  cytoplasmic, membrane-bounded vesicle  regulation of protein localization  positive regulation of GTPase activity  regulation of small GTPase mediated signal transduction  
Pathways : KEGGNeurotrophin signaling pathway    Vasopressin-regulated water reabsorption   
NDEx NetworkARHGDIG
Atlas of Cancer Signalling NetworkARHGDIG
Wikipedia pathwaysARHGDIG
Orthology - Evolution
OrthoDB398
GeneTree (enSembl)ENSG00000242173
Phylogenetic Trees/Animal Genes : TreeFamARHGDIG
HOVERGENQ99819
HOGENOMQ99819
Homologs : HomoloGeneARHGDIG
Homology/Alignments : Family Browser (UCSC)ARHGDIG
Gene fusions - Rearrangements
Fusion : MitelmanASTN2/ARHGDIG [9q33.1/16p13.3]  [t(9;16)(q33;p13)]  
Fusion: TCGAASTN2 9q33.1 ARHGDIG 16p13.3 GBM
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARHGDIG [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARHGDIG
dbVarARHGDIG
ClinVarARHGDIG
1000_GenomesARHGDIG 
Exome Variant ServerARHGDIG
ExAC (Exome Aggregation Consortium)ARHGDIG (select the gene name)
Genetic variants : HAPMAP398
Genomic Variants (DGV)ARHGDIG [DGVbeta]
DECIPHER (Syndromes)16:330606-333003  ENSG00000242173
CONAN: Copy Number AnalysisARHGDIG 
Mutations
ICGC Data PortalARHGDIG 
TCGA Data PortalARHGDIG 
Broad Tumor PortalARHGDIG
OASIS PortalARHGDIG [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARHGDIG  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARHGDIG
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARHGDIG
DgiDB (Drug Gene Interaction Database)ARHGDIG
DoCM (Curated mutations)ARHGDIG (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARHGDIG (select a term)
intoGenARHGDIG
Cancer3DARHGDIG(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM602844   
Orphanet
MedgenARHGDIG
Genetic Testing Registry ARHGDIG
NextProtQ99819 [Medical]
TSGene398
GENETestsARHGDIG
Huge Navigator ARHGDIG [HugePedia]
snp3D : Map Gene to Disease398
BioCentury BCIQARHGDIG
ClinGenARHGDIG
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD398
Chemical/Pharm GKB GenePA24965
Clinical trialARHGDIG
Miscellaneous
canSAR (ICR)ARHGDIG (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARHGDIG
EVEXARHGDIG
GoPubMedARHGDIG
iHOPARHGDIG
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 12:56:24 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.