Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ARID1A (AT rich interactive domain 1A (SWI-like))

Identity

Other namesB120
BAF250
BAF250a
BM029
C1orf4
ELD
MRD14
OSA1
P270
SMARCF1
hELD
hOSA1
HGNC (Hugo) ARID1A
LocusID (NCBI) 8289
Location 1p36.11
Location_base_pair Starts at 27022522 and ends at 27108601 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARID1A   11110
Entrez_Gene (NCBI)ARID1A  8289  AT rich interactive domain 1A (SWI-like)
Cards
GeneCards (Weizmann)ARID1A
Ensembl (Hinxton)ENSG00000117713 [Gene_View]  chr1:27022522-27108601 [Contig_View]  ARID1A [Vega]
AceView (NCBI)ARID1A
Genatlas (Paris)ARID1A
SOURCE (Stanford)NM_006015 NM_018450 NM_139135
Genomic and cartography
GoldenPath (UCSC)ARID1A  -  1p36.11   chr1:27022522-27108601 +  1p36.11   [Description]    (hg19-Feb_2009)
EnsemblARID1A - 1p36.11 [CytoView]
Mapping of homologs : NCBIARID1A [Mapview]
OMIM603024   614607   
Gene and transcription
Genbank (Entrez)AB001895 AB210022 AF217506 AF219114 AF231056
RefSeq transcript (SRS)NM_006015 NM_018450 NM_139135
RefSeq transcript (Entrez)NM_006015 NM_018450 NM_139135
RefSeq genomic (SRS)AC_000133 NC_000001 NC_018912 NG_029965 NT_004610 NW_001838576 NW_004077990
RefSeq genomic (Entrez)AC_000133 NC_000001 NC_018912 NG_029965 NT_004610 NW_001838576 NW_004077990
Consensus coding sequences : CCDS (NCBI)ARID1A
Cluster EST : UnigeneHs.468972 [ SRS ] Hs.468972 [ NCBI ]
CGAP (NCI)Hs.468972
Alternative Splicing : Fast-db (Paris)GSHG0000282
Alternative Splicing GalleryENSG00000117713
Gene ExpressionARID1A [ NCBI-GEO ]   ARID1A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO14497 (SRS) O14497 (Uniprot)
NextProtO14497
With graphics : InterProO14497
Splice isoforms : SwissVarO14497(Swissvar)
Domaine pattern : Prosite (SRS)ARID (PS51011)   
Domaine pattern : Prosite (Expaxy)ARID (PS51011)   
Domains : Interpro (SRS)ARID/BRIGHT_DNA-bd    ARM-like    DUF3518   
Domains : Interpro (EBI)ARID/BRIGHT_DNA-bd    ARM-like    DUF3518   
Related proteins : CluSTrO14497
Domain families : Pfam (SRS)ARID (PF01388)    DUF3518 (PF12031)   
Domain families : Pfam (Sanger)ARID (PF01388)    DUF3518 (PF12031)   
Domain families : Pfam (NCBI)pfam01388    pfam12031   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
DMDM8289
Blocks (Seattle)O14497
PDB (SRS)1RYU   
PDB (PDBSum)1RYU   
PDB (IMB)1RYU   
PDB (RSDB)1RYU   
Human Protein AtlasENSG00000117713
HPRD04319
IPIIPI00643722   IPI00642705   IPI00929427   IPI00472891   IPI00020480   IPI00980029   IPI00979164   IPI00975759   
Protein Interaction databases
DIP (DOE-UCLA)O14497
IntAct (EBI)O14497
FunCoupENSG00000117713
REACTOMEARID1A
Protein Interaction Database8289
BioGRIDARID1A
InParanoidO14497
Interologous Interaction database O14497
IntegromeDBARID1A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARID1A
SNP (GeneSNP Utah)ARID1A
SNP : HGBaseARID1A
Genetic variants : HAPMAPARID1A
Cancer Gene: CensusARID1A 
Somatic Mutations in Cancer : COSMICARID1A 
CONAN: Copy Number AnalysisARID1A 
Mutations and Diseases : HGMDARID1A
OMIM603024    614607   
GENETests603024    614607   
Disease Genetic AssociationARID1A
Huge Navigator ARID1A [HugePedia]  ARID1A [HugeCancerGEM]
Genomic VariantsARID1A  ARID1A [DGVbeta]
snp3D : Map Gene to Disease8289
General knowledge
Homologs : HomoloGeneARID1A
Homology/Alignments : Family Browser (UCSC)ARID1A
Phylogenetic Trees/Animal Genes : TreeFamARID1A
Chemical/Protein Interactions : CTD8289
Chemical/Pharm GKB GenePA35960
Clinical trialARID1A
Cancer Resource (Charite)ENSG00000117713
Ontology : AmiGOnuclear chromatin  DNA binding  transcription coactivator activity  protein binding  nucleus  nucleus  nucleolus  nucleosome disassembly  chromatin remodeling  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  nervous system development  SWI/SNF complex  ligand-dependent nuclear receptor binding  intracellular estrogen receptor signaling pathway  androgen receptor signaling pathway  nucleosome mobilization  glucocorticoid receptor signaling pathway  positive regulation of transcription, DNA-dependent  chromatin-mediated maintenance of transcription  npBAF complex  nBAF complex  
Ontology : EGO-EBInuclear chromatin  DNA binding  transcription coactivator activity  protein binding  nucleus  nucleus  nucleolus  nucleosome disassembly  chromatin remodeling  transcription, DNA-dependent  regulation of transcription from RNA polymerase II promoter  nervous system development  SWI/SNF complex  ligand-dependent nuclear receptor binding  intracellular estrogen receptor signaling pathway  androgen receptor signaling pathway  nucleosome mobilization  glucocorticoid receptor signaling pathway  positive regulation of transcription, DNA-dependent  chromatin-mediated maintenance of transcription  npBAF complex  nBAF complex  
Pathways : BIOCARTAControl of Gene Expression by Vitamin D Receptor [Genes]    Chromatin Remodeling by hSWI/SNF ATP-dependent Complexes [Genes]   
Other databases
Probes
Litterature
PubMed79 Pubmed reference(s) in Entrez
PubGeneARID1A
iHOPARID1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:25:20 CEST 2013
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