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ARID1B (AT rich interactive domain 1B (SWI1-like))

Identity

Other names6A3-5
BAF250B
BRIGHT
DAN15
ELD/OSA1
MRD12
OSA2
P250R
HGNC (Hugo) ARID1B
LocusID (NCBI) 57492
Location 6q25.3
Location_base_pair Starts at 157099064 and ends at 157531913 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ARID1B   18040
Cards
Entrez_Gene (NCBI)ARID1B  57492  AT rich interactive domain 1B (SWI1-like)
GeneCards (Weizmann)ARID1B
Ensembl (Hinxton)ENSG00000049618 [Gene_View]  chr6:157099064-157531913 [Contig_View]  ARID1B [Vega]
ICGC DataPortalENSG00000049618
cBioPortalARID1B
AceView (NCBI)ARID1B
Genatlas (Paris)ARID1B
WikiGenes57492
SOURCE (Princeton)NM_017519 NM_020732
Genomic and cartography
GoldenPath (UCSC)ARID1B  -  6q25.3   chr6:157099064-157531913 +  6q25.3   [Description]    (hg19-Feb_2009)
EnsemblARID1B - 6q25.3 [CytoView]
Mapping of homologs : NCBIARID1B [Mapview]
OMIM614556   614562   
Gene and transcription
Genbank (Entrez)AB033061 AF253515 AF259792 AF468300 AF521671
RefSeq transcript (Entrez)NM_017519 NM_020732
RefSeq genomic (Entrez)AC_000138 NC_000006 NC_018917 NG_032093 NT_025741 NW_001838990 NW_004929328
Consensus coding sequences : CCDS (NCBI)ARID1B
Cluster EST : UnigeneHs.744461 [ NCBI ]
CGAP (NCI)Hs.744461
Alternative Splicing : Fast-db (Paris)GSHG0026145
Alternative Splicing GalleryENSG00000049618
Gene ExpressionARID1B [ NCBI-GEO ]     ARID1B [ SEEK ]   ARID1B [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NFD5 (Uniprot)
NextProtQ8NFD5  [Medical]
With graphics : InterProQ8NFD5
Splice isoforms : SwissVarQ8NFD5 (Swissvar)
Domaine pattern : Prosite (Expaxy)ARID (PS51011)   
Domains : Interpro (EBI)ARID/BRIGHT_DNA-bd [organisation]   ARM-like [organisation]   DUF3518 [organisation]  
Related proteins : CluSTrQ8NFD5
Domain families : Pfam (Sanger)ARID (PF01388)    DUF3518 (PF12031)   
Domain families : Pfam (NCBI)pfam01388    pfam12031   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
DMDM Disease mutations57492
Blocks (Seattle)Q8NFD5
PDB (SRS)2CXY    2EH9   
PDB (PDBSum)2CXY    2EH9   
PDB (IMB)2CXY    2EH9   
PDB (RSDB)2CXY    2EH9   
Human Protein AtlasENSG00000049618 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ8NFD5
HPRD10660
IPIIPI00015404   IPI00395617   IPI00396577   IPI00023986   IPI00152720   IPI00552725   IPI00742937   IPI00964415   
Protein Interaction databases
DIP (DOE-UCLA)Q8NFD5
IntAct (EBI)Q8NFD5
FunCoupENSG00000049618
BioGRIDARID1B
InParanoidQ8NFD5
Interologous Interaction database Q8NFD5
IntegromeDBARID1B
STRING (EMBL)ARID1B
Ontologies - Pathways
Ontology : AmiGODNA binding  transcription coactivator activity  protein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  nervous system development  SWI/SNF complex  chromatin-mediated maintenance of transcription  
Ontology : EGO-EBIDNA binding  transcription coactivator activity  protein binding  nucleus  nucleolus  cytoplasm  transcription, DNA-templated  nervous system development  SWI/SNF complex  chromatin-mediated maintenance of transcription  
Protein Interaction DatabaseARID1B
Wikipedia pathwaysARID1B
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARID1B
snp3D : Map Gene to Disease57492
SNP (GeneSNP Utah)ARID1B
SNP : HGBaseARID1B
Genetic variants : HAPMAPARID1B
Exome VariantARID1B
1000_GenomesARID1B 
ICGC programENSG00000049618 
Somatic Mutations in Cancer : COSMICARID1B 
CONAN: Copy Number AnalysisARID1B 
Mutations and Diseases : HGMDARID1B
Mutations and Diseases : intOGenARID1B
Genomic VariantsARID1B  ARID1B [DGVbeta]
dbVarARID1B
ClinVarARID1B
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM614556    614562   
MedgenARID1B
GENETestsARID1B
Disease Genetic AssociationARID1B
Huge Navigator ARID1B [HugePedia]  ARID1B [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneARID1B
Homology/Alignments : Family Browser (UCSC)ARID1B
Phylogenetic Trees/Animal Genes : TreeFamARID1B
Chemical/Protein Interactions : CTD57492
Chemical/Pharm GKB GenePA134909463
Clinical trialARID1B
Cancer Resource (Charite)ENSG00000049618
Other databases
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
CoreMineARID1B
iHOPARID1B
OncoSearchARID1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 22 18:39:14 CEST 2014

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