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ARID2 (AT-rich interaction domain 2)

Identity

Alias (NCBI)BAF200
CSS6
p200
HGNC (Hugo) ARID2
HGNC Alias symbKIAA1557
DKFZp686G052
FLJ30619
BAF200
HGNC Previous nameAT rich interactive domain 2 (ARID, RFX-like)
LocusID (NCBI) 196528
Atlas_Id 52470
Location 12q12  [Link to chromosome band 12q12]
Location_base_pair Starts at 45729706 and ends at 45908037 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID2 (12q12) / SCAF11 (12q12)ARID2 (12q12) / SUPT20H (13q13.3)ARID2 (12q12) / TMEM117 (12q12)
ARID2 (12q12) / TMPRSS2 (21q22.3)ARID2 (12q12) / YAF2 (12q12)ARID2 (12q12) / ZNF641 (12q13.11)
GNPTAB (12q23.2) / ARID2 (12q12)ARID2 12q12 / SCAF11 12q12ARID2 12q12 / TMPRSS2 21q22.3
ARID2 12q12 / ZNF641 12q13.11

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

 

Nomenclature
HGNC (Hugo)ARID2   18037
Cards
Entrez_Gene (NCBI)ARID2    AT-rich interaction domain 2
AliasesBAF200; CSS6; p200
GeneCards (Weizmann)ARID2
Ensembl hg19 (Hinxton)ENSG00000189079 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189079 [Gene_View]  ENSG00000189079 [Sequence]  chr12:45729706-45908037 [Contig_View]  ARID2 [Vega]
ICGC DataPortalENSG00000189079
TCGA cBioPortalARID2
AceView (NCBI)ARID2
Genatlas (Paris)ARID2
SOURCE (Princeton)ARID2
Genetics Home Reference (NIH)ARID2
Genomic and cartography
GoldenPath hg38 (UCSC)ARID2  -     chr12:45729706-45908037 +  12q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARID2  -     12q12   [Description]    (hg19-Feb_2009)
GoldenPathARID2 - 12q12 [CytoView hg19]  ARID2 - 12q12 [CytoView hg38]
ImmunoBaseENSG00000189079
Genome Data Viewer NCBIARID2 [Mapview hg19]  
OMIM609539   617808   
Gene and transcription
Genbank (Entrez)AB046777 AK027617 AK027718 AK055181 AK075385
RefSeq transcript (Entrez)NM_001347839 NM_152641
Consensus coding sequences : CCDS (NCBI)ARID2
Gene ExpressionARID2 [ NCBI-GEO ]   ARID2 [ EBI - ARRAY_EXPRESS ]   ARID2 [ SEEK ]   ARID2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARID2 [ Firebrowse - Broad ]
GenevisibleExpression of ARID2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)196528
GTEX Portal (Tissue expression)ARID2
Human Protein AtlasENSG00000189079-ARID2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CP9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ68CP9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ68CP9
PhosPhoSitePlusQ68CP9
Domaine pattern : Prosite (Expaxy)ARID (PS51011)    RFX_DBD (PS51526)    ZINC_FINGER_C2H2_1 (PS00028)   
Domains : Interpro (EBI)ARID_dom    ARID_dom_sf    ARM-type_fold    DNA-bd_RFX    WH-like_DNA-bd_sf    WH_DNA-bd_sf    Znf_C2H2_type   
Domain families : Pfam (Sanger)ARID (PF01388)    RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam01388    pfam02257   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
Conserved Domain (NCBI)ARID2
SuperfamilyQ68CP9
AlphaFold pdb e-kbQ68CP9   
Human Protein Atlas [tissue]ENSG00000189079-ARID2 [tissue]
HPRD16505
Protein Interaction databases
DIP (DOE-UCLA)Q68CP9
IntAct (EBI)Q68CP9
BioGRIDARID2
STRING (EMBL)ARID2
ZODIACARID2
Ontologies - Pathways
QuickGOQ68CP9
Ontology : AmiGOheart morphogenesis  DNA binding  protein binding  nucleoplasm  plasma membrane  nucleosome disassembly  regulation of transcription, DNA-templated  negative regulation of cell population proliferation  negative regulation of cell migration  homeostatic process  metal ion binding  embryonic organ development  cardiac muscle cell proliferation  coronary artery morphogenesis  positive regulation of double-strand break repair via homologous recombination  
Ontology : EGO-EBIheart morphogenesis  DNA binding  protein binding  nucleoplasm  plasma membrane  nucleosome disassembly  regulation of transcription, DNA-templated  negative regulation of cell population proliferation  negative regulation of cell migration  homeostatic process  metal ion binding  embryonic organ development  cardiac muscle cell proliferation  coronary artery morphogenesis  positive regulation of double-strand break repair via homologous recombination  
NDEx NetworkARID2
Atlas of Cancer Signalling NetworkARID2
Wikipedia pathwaysARID2
Orthology - Evolution
OrthoDB196528
GeneTree (enSembl)ENSG00000189079
Phylogenetic Trees/Animal Genes : TreeFamARID2
Homologs : HomoloGeneARID2
Homology/Alignments : Family Browser (UCSC)ARID2
Gene fusions - Rearrangements
Fusion : MitelmanARID2/TMPRSS2 [12q12/21q22.3]  
Fusion : MitelmanARID2/ZNF641 [12q12/12q13.11]  
Fusion : QuiverARID2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARID2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARID2
dbVarARID2
ClinVarARID2
MonarchARID2
1000_GenomesARID2 
Exome Variant ServerARID2
GNOMAD BrowserENSG00000189079
Varsome BrowserARID2
ACMGARID2 variants
VarityQ68CP9
Genomic Variants (DGV)ARID2 [DGVbeta]
DECIPHERARID2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARID2 
Mutations
ICGC Data PortalARID2 
TCGA Data PortalARID2 
Broad Tumor PortalARID2
OASIS PortalARID2 [ Somatic mutations - Copy number]
Cancer Gene: CensusARID2 
Somatic Mutations in Cancer : COSMICARID2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARID2
Mutations and Diseases : HGMDARID2
intOGen PortalARID2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARID2
DgiDB (Drug Gene Interaction Database)ARID2
DoCM (Curated mutations)ARID2
CIViC (Clinical Interpretations of Variants in Cancer)ARID2
Cancer3DARID2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609539    617808   
Orphanet
DisGeNETARID2
MedgenARID2
Genetic Testing Registry ARID2
NextProtQ68CP9 [Medical]
GENETestsARID2
Target ValidationARID2
Huge Navigator ARID2 [HugePedia]
ClinGenARID2
Clinical trials, drugs, therapy
MyCancerGenomeARID2
Protein Interactions : CTDARID2
Pharm GKB GenePA134916396
PharosQ68CP9
Clinical trialARID2
Miscellaneous
canSAR (ICR)ARID2
HarmonizomeARID2
DataMed IndexARID2
Probes
Litterature
PubMed73 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARID2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:05 CEST 2021
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