Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARID2 (AT rich interactive domain 2 (ARID, RFX-like))

Identity

Other namesBAF200
p200
HGNC (Hugo) ARID2
LocusID (NCBI) 196528
Location 12q12
Location_base_pair Starts at 46123620 and ends at 46301819 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ARID2   18037
Entrez_Gene (NCBI)ARID2  196528  AT rich interactive domain 2 (ARID, RFX-like)
Cards
GeneCards (Weizmann)ARID2
Ensembl (Hinxton)ENSG00000189079 [Gene_View]  chr12:46123620-46301819 [Contig_View]  ARID2 [Vega]
AceView (NCBI)ARID2
Genatlas (Paris)ARID2
SOURCE (Stanford)NM_152641
Genomic and cartography
GoldenPath (UCSC)ARID2  -  12q12   chr12:46123620-46301819 +  12q12   [Description]    (hg19-Feb_2009)
EnsemblARID2 - 12q12 [CytoView]
Mapping of homologs : NCBIARID2 [Mapview]
OMIM609539   
Gene and transcription
Genbank (Entrez)AB046777 AK027617 AK027718 AK055181 AK075385
RefSeq transcript (SRS)NM_152641
RefSeq transcript (Entrez)NM_152641
RefSeq genomic (SRS)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
RefSeq genomic (Entrez)AC_000144 NC_000012 NC_018923 NT_029419 NW_001838057 NW_004078075
Consensus coding sequences : CCDS (NCBI)ARID2
Cluster EST : UnigeneHs.317304 [ SRS ] Hs.317304 [ NCBI ]
CGAP (NCI)Hs.317304
Alternative Splicing : Fast-db (Paris)GSHG0006600
Alternative Splicing GalleryENSG00000189079
Gene ExpressionARID2 [ NCBI-GEO ]   ARID2 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ68CP9 (SRS) Q68CP9 (Uniprot)
NextProtQ68CP9
With graphics : InterProQ68CP9
Splice isoforms : SwissVarQ68CP9(Swissvar)
Domaine pattern : Prosite (SRS)ARID (PS51011)    RFX_DBD (PS51526)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domaine pattern : Prosite (Expaxy)ARID (PS51011)    RFX_DBD (PS51526)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)ARID/BRIGHT_DNA-bd    DNA-bd_RFX    WHTH_trsnscrt_rep_DNA-bd    Znf_C2H2    Znf_C2H2-like   
Domains : Interpro (EBI)ARID/BRIGHT_DNA-bd    DNA-bd_RFX    WHTH_trsnscrt_rep_DNA-bd    Znf_C2H2    Znf_C2H2-like   
Related proteins : CluSTrQ68CP9
Domain families : Pfam (SRS)ARID (PF01388)    RFX_DNA_binding (PF02257)   
Domain families : Pfam (Sanger)ARID (PF01388)    RFX_DNA_binding (PF02257)   
Domain families : Pfam (NCBI)pfam01388    pfam02257   
Domain families : Smart (EMBL)BRIGHT (SM00501)  ZnF_C2H2 (SM00355)  
DMDM196528
Blocks (Seattle)Q68CP9
Human Protein AtlasENSG00000189079
HPRD16505
IPIIPI00470537   IPI00444237   IPI00647133   IPI00884387   IPI01017948   IPI01024924   
Protein Interaction databases
DIP (DOE-UCLA)Q68CP9
IntAct (EBI)Q68CP9
FunCoupENSG00000189079
REACTOMEARID2
Protein Interaction Database196528
BioGRIDARID2
InParanoidQ68CP9
Interologous Interaction database Q68CP9
IntegromeDBARID2
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARID2
SNP (GeneSNP Utah)ARID2
SNP : HGBaseARID2
Genetic variants : HAPMAPARID2
Cancer Gene: CensusARID2 
Somatic Mutations in Cancer : COSMICARID2 
CONAN: Copy Number AnalysisARID2 
Mutations and Diseases : HGMDARID2
OMIM609539   
GENETests609539   
Disease Genetic AssociationARID2
Huge Navigator ARID2 [HugePedia]  ARID2 [HugeCancerGEM]
Genomic VariantsARID2  ARID2 [DGVbeta]
snp3D : Map Gene to Disease196528
General knowledge
Homologs : HomoloGeneARID2
Homology/Alignments : Family Browser (UCSC)ARID2
Phylogenetic Trees/Animal Genes : TreeFamARID2
Chemical/Protein Interactions : CTD196528
Chemical/Pharm GKB GenePA134916396
Clinical trialARID2
Cancer Resource (Charite)ENSG00000189079
Ontology : AmiGODNA binding  protein binding  nucleus  nucleosome disassembly  transcription, DNA-dependent  regulation of transcription, DNA-dependent  zinc ion binding  chromatin modification  metal ion binding  
Ontology : EGO-EBIDNA binding  protein binding  nucleus  nucleosome disassembly  transcription, DNA-dependent  regulation of transcription, DNA-dependent  zinc ion binding  chromatin modification  metal ion binding  
Other databases
Probes
Litterature
PubMed31 Pubmed reference(s) in Entrez
PubGeneARID2
iHOPARID2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:22:07 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.