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ARID3B (AT-rich interaction domain 3B)

Identity

Alias_namesAT rich interactive domain 3B (BRIGHT- like)
AT rich interactive domain 3B (BRIGHT-like)
Alias_symbol (synonym)BDP
DRIL2
Other alias
HGNC (Hugo) ARID3B
LocusID (NCBI) 10620
Atlas_Id 51281
Location 15q24.1  [Link to chromosome band 15q24]
Location_base_pair Starts at 74833518 and ends at 74890472 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARID3B (15q24.1) / RBMS1 (2q24.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARID3B   14350
Cards
Entrez_Gene (NCBI)ARID3B  10620  AT-rich interaction domain 3B
AliasesBDP; DRIL2
GeneCards (Weizmann)ARID3B
Ensembl hg19 (Hinxton)ENSG00000179361 [Gene_View]  chr15:74833518-74890472 [Contig_View]  ARID3B [Vega]
Ensembl hg38 (Hinxton)ENSG00000179361 [Gene_View]  chr15:74833518-74890472 [Contig_View]  ARID3B [Vega]
ICGC DataPortalENSG00000179361
TCGA cBioPortalARID3B
AceView (NCBI)ARID3B
Genatlas (Paris)ARID3B
WikiGenes10620
SOURCE (Princeton)ARID3B
Genetics Home Reference (NIH)ARID3B
Genomic and cartography
GoldenPath hg19 (UCSC)ARID3B  -     chr15:74833518-74890472 +  15q24.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARID3B  -     15q24.1   [Description]    (hg38-Dec_2013)
EnsemblARID3B - 15q24.1 [CytoView hg19]  ARID3B - 15q24.1 [CytoView hg38]
Mapping of homologs : NCBIARID3B [Mapview hg19]  ARID3B [Mapview hg38]
OMIM612457   
Gene and transcription
Genbank (Entrez)AB208830 AF116846 AK298716 AK302034 AL137417
RefSeq transcript (Entrez)NM_001307939 NM_006465
RefSeq genomic (Entrez)NC_000015 NC_018926 NT_010194 NW_004929398
Consensus coding sequences : CCDS (NCBI)ARID3B
Cluster EST : UnigeneHs.655532 [ NCBI ]
CGAP (NCI)Hs.655532
Alternative Splicing GalleryENSG00000179361
Gene ExpressionARID3B [ NCBI-GEO ]   ARID3B [ EBI - ARRAY_EXPRESS ]   ARID3B [ SEEK ]   ARID3B [ MEM ]
Gene Expression Viewer (FireBrowse)ARID3B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10620
GTEX Portal (Tissue expression)ARID3B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVW6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVW6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVW6
Splice isoforms : SwissVarQ8IVW6
PhosPhoSitePlusQ8IVW6
Domaine pattern : Prosite (Expaxy)ARID (PS51011)    REKLES (PS51486)   
Domains : Interpro (EBI)ARID_dom    REKLES_domain   
Domain families : Pfam (Sanger)ARID (PF01388)   
Domain families : Pfam (NCBI)pfam01388   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
Conserved Domain (NCBI)ARID3B
DMDM Disease mutations10620
Blocks (Seattle)ARID3B
SuperfamilyQ8IVW6
Human Protein AtlasENSG00000179361
Peptide AtlasQ8IVW6
HPRD09806
IPIIPI00328266   IPI00853367   IPI00793438   IPI01014437   IPI01014854   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVW6
IntAct (EBI)Q8IVW6
FunCoupENSG00000179361
BioGRIDARID3B
STRING (EMBL)ARID3B
ZODIACARID3B
Ontologies - Pathways
QuickGOQ8IVW6
Ontology : AmiGORNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  DNA binding  protein binding  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  biological_process  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II core promoter proximal region sequence-specific DNA binding  RNA polymerase II distal enhancer sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding  transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding  DNA binding  protein binding  nucleus  nucleoplasm  transcription from RNA polymerase II promoter  biological_process  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkARID3B
Atlas of Cancer Signalling NetworkARID3B
Wikipedia pathwaysARID3B
Orthology - Evolution
OrthoDB10620
GeneTree (enSembl)ENSG00000179361
Phylogenetic Trees/Animal Genes : TreeFamARID3B
HOVERGENQ8IVW6
HOGENOMQ8IVW6
Homologs : HomoloGeneARID3B
Homology/Alignments : Family Browser (UCSC)ARID3B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARID3B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARID3B
dbVarARID3B
ClinVarARID3B
1000_GenomesARID3B 
Exome Variant ServerARID3B
ExAC (Exome Aggregation Consortium)ARID3B (select the gene name)
Genetic variants : HAPMAP10620
Genomic Variants (DGV)ARID3B [DGVbeta]
DECIPHER (Syndromes)15:74833518-74890472  ENSG00000179361
CONAN: Copy Number AnalysisARID3B 
Mutations
ICGC Data PortalARID3B 
TCGA Data PortalARID3B 
Broad Tumor PortalARID3B
OASIS PortalARID3B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARID3B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARID3B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARID3B
DgiDB (Drug Gene Interaction Database)ARID3B
DoCM (Curated mutations)ARID3B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARID3B (select a term)
intoGenARID3B
Cancer3DARID3B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612457   
Orphanet
MedgenARID3B
Genetic Testing Registry ARID3B
NextProtQ8IVW6 [Medical]
TSGene10620
GENETestsARID3B
Huge Navigator ARID3B [HugePedia]
snp3D : Map Gene to Disease10620
BioCentury BCIQARID3B
ClinGenARID3B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10620
Chemical/Pharm GKB GenePA134896829
Clinical trialARID3B
Miscellaneous
canSAR (ICR)ARID3B (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARID3B
EVEXARID3B
GoPubMedARID3B
iHOPARID3B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:30 CET 2017

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