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ARID3C (AT-rich interaction domain 3C)

Identity

Alias_namesAT rich interactive domain 3C (BRIGHT- like)
AT rich interactive domain 3C (BRIGHT-like)
Other alias-
HGNC (Hugo) ARID3C
LocusID (NCBI) 138715
Atlas_Id 60486
Location 9p13.3  [Link to chromosome band 9p13]
Location_base_pair Starts at 34621458 and ends at 34628014 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARID3C (9p13.3) / DCTN3 (9p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARID3C   21209
Cards
Entrez_Gene (NCBI)ARID3C  138715  AT-rich interaction domain 3C
Aliases
GeneCards (Weizmann)ARID3C
Ensembl hg19 (Hinxton)ENSG00000205143 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205143 [Gene_View]  chr9:34621458-34628014 [Contig_View]  ARID3C [Vega]
ICGC DataPortalENSG00000205143
TCGA cBioPortalARID3C
AceView (NCBI)ARID3C
Genatlas (Paris)ARID3C
WikiGenes138715
SOURCE (Princeton)ARID3C
Genetics Home Reference (NIH)ARID3C
Genomic and cartography
GoldenPath hg38 (UCSC)ARID3C  -     chr9:34621458-34628014 -  9p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARID3C  -     9p13.3   [Description]    (hg19-Feb_2009)
EnsemblARID3C - 9p13.3 [CytoView hg19]  ARID3C - 9p13.3 [CytoView hg38]
Mapping of homologs : NCBIARID3C [Mapview hg19]  ARID3C [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC148443
RefSeq transcript (Entrez)NM_001017363
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARID3C
Cluster EST : UnigeneHs.534549 [ NCBI ]
CGAP (NCI)Hs.534549
Alternative Splicing GalleryENSG00000205143
Gene ExpressionARID3C [ NCBI-GEO ]   ARID3C [ EBI - ARRAY_EXPRESS ]   ARID3C [ SEEK ]   ARID3C [ MEM ]
Gene Expression Viewer (FireBrowse)ARID3C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)138715
GTEX Portal (Tissue expression)ARID3C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKF2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKF2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKF2
Splice isoforms : SwissVarA6NKF2
PhosPhoSitePlusA6NKF2
Domaine pattern : Prosite (Expaxy)ARID (PS51011)    REKLES (PS51486)   
Domains : Interpro (EBI)ARID_dom    REKLES_domain   
Domain families : Pfam (Sanger)ARID (PF01388)   
Domain families : Pfam (NCBI)pfam01388   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
Conserved Domain (NCBI)ARID3C
DMDM Disease mutations138715
Blocks (Seattle)ARID3C
SuperfamilyA6NKF2
Human Protein AtlasENSG00000205143
Peptide AtlasA6NKF2
HPRD18550
IPIIPI00062225   
Protein Interaction databases
DIP (DOE-UCLA)A6NKF2
IntAct (EBI)A6NKF2
FunCoupENSG00000205143
BioGRIDARID3C
STRING (EMBL)ARID3C
ZODIACARID3C
Ontologies - Pathways
QuickGOA6NKF2
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  nucleus  cytoplasm  transcription from RNA polymerase II promoter  membrane raft  positive regulation of transcription from RNA polymerase II promoter  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding  chromatin binding  nucleus  cytoplasm  transcription from RNA polymerase II promoter  membrane raft  positive regulation of transcription from RNA polymerase II promoter  
NDEx NetworkARID3C
Atlas of Cancer Signalling NetworkARID3C
Wikipedia pathwaysARID3C
Orthology - Evolution
OrthoDB138715
GeneTree (enSembl)ENSG00000205143
Phylogenetic Trees/Animal Genes : TreeFamARID3C
HOVERGENA6NKF2
HOGENOMA6NKF2
Homologs : HomoloGeneARID3C
Homology/Alignments : Family Browser (UCSC)ARID3C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARID3C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARID3C
dbVarARID3C
ClinVarARID3C
1000_GenomesARID3C 
Exome Variant ServerARID3C
ExAC (Exome Aggregation Consortium)ARID3C (select the gene name)
Genetic variants : HAPMAP138715
Genomic Variants (DGV)ARID3C [DGVbeta]
DECIPHERARID3C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARID3C 
Mutations
ICGC Data PortalARID3C 
TCGA Data PortalARID3C 
Broad Tumor PortalARID3C
OASIS PortalARID3C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARID3C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARID3C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARID3C
DgiDB (Drug Gene Interaction Database)ARID3C
DoCM (Curated mutations)ARID3C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARID3C (select a term)
intoGenARID3C
Cancer3DARID3C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARID3C
Genetic Testing Registry ARID3C
NextProtA6NKF2 [Medical]
TSGene138715
GENETestsARID3C
Target ValidationARID3C
Huge Navigator ARID3C [HugePedia]
snp3D : Map Gene to Disease138715
BioCentury BCIQARID3C
ClinGenARID3C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD138715
Chemical/Pharm GKB GenePA134928507
Clinical trialARID3C
Miscellaneous
canSAR (ICR)ARID3C (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARID3C
EVEXARID3C
GoPubMedARID3C
iHOPARID3C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:43 CEST 2017

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