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ARID4B (AT-rich interaction domain 4B)

Identity

Alias (NCBI)BCAA
BRCAA1
RBBP1L1
RBP1L1
SAP180
HGNC (Hugo) ARID4B
HGNC Alias symbBCAA
BRCAA1
SAP180
HGNC Previous nameRBP1L1
HGNC Previous nameretinoblastoma binding protein 1-like 1
 AT rich interactive domain 4B (RBP1- like)
 AT rich interactive domain 4B (RBP1-like)
LocusID (NCBI) 51742
Atlas_Id 704
Location 1q42.3  [Link to chromosome band 1q42]
Location_base_pair Starts at 235166902 and ends at 235328179 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARID4B (1q42.3) / ALB (4q13.3)ARID4B (1q42.3) / ARID4B (1q42.3)ARID4B (1q42.3) / B3GALNT2 (1q42.3)
ARID4B (1q42.3) / BCL6 (3q27.3)ARID4B (1q42.3) / DDX21 (10q22.1)ARID4B (1q42.3) / GGPS1 (1q42.3)
ARID4B (1q42.3) / GNPAT (1q42.2)ARID4B (1q42.3) / ING3 (7q31.31)ARID4B (1q42.3) / NTPCR (1q42.2)
ARID4B (1q42.3) / PCNX2 (1q42.2)ARID4B (1q42.3) / RPS6KC1 (1q32.3)ARID4B (1q42.3) / SLC4A7 (3p24.1)
ARID4B (1q42.3) / TM9SF2 (13q32.3)DNAJC7 (17q21.2) / ARID4B (1q42.3)GDF15 (19p13.11) / ARID4B (1q42.3)
ARID4B 1q42.3 / B3GALNT2 1q42.3ARID4B 1q42.3 / GNPAT 1q42.2ARID4B 1q42.3 / NTPCR 1q42.2
ARID4B 1q42.3 / PCNXL2 1q42.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  inv(1)(q32q42) ARID4B/RPS6KC1
t(1;7)(q42;q31) ARID4B/ING3

External links

Nomenclature
HGNC (Hugo)ARID4B   15550
Cards
Entrez_Gene (NCBI)ARID4B    AT-rich interaction domain 4B
AliasesBCAA; BRCAA1; RBBP1L1; RBP1L1; 
SAP180
GeneCards (Weizmann)ARID4B
Ensembl hg19 (Hinxton)ENSG00000054267 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054267 [Gene_View]  ENSG00000054267 [Sequence]  chr1:235166902-235328179 [Contig_View]  ARID4B [Vega]
ICGC DataPortalENSG00000054267
TCGA cBioPortalARID4B
AceView (NCBI)ARID4B
Genatlas (Paris)ARID4B
SOURCE (Princeton)ARID4B
Genetics Home Reference (NIH)ARID4B
Genomic and cartography
GoldenPath hg38 (UCSC)ARID4B  -     chr1:235166902-235328179 -  1q42.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARID4B  -     1q42.3   [Description]    (hg19-Feb_2009)
GoldenPathARID4B - 1q42.3 [CytoView hg19]  ARID4B - 1q42.3 [CytoView hg38]
ImmunoBaseENSG00000054267
Genome Data Viewer NCBIARID4B [Mapview hg19]  
OMIM609696   
Gene and transcription
Genbank (Entrez)AB210032 AF083249 AF208045 AF214114 AF227899
RefSeq transcript (Entrez)NM_001206794 NM_016374 NM_031371
Consensus coding sequences : CCDS (NCBI)ARID4B
Gene ExpressionARID4B [ NCBI-GEO ]   ARID4B [ EBI - ARRAY_EXPRESS ]   ARID4B [ SEEK ]   ARID4B [ MEM ]
Gene Expression Viewer (FireBrowse)ARID4B [ Firebrowse - Broad ]
GenevisibleExpression of ARID4B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51742
GTEX Portal (Tissue expression)ARID4B
Human Protein AtlasENSG00000054267-ARID4B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARID4B
Human Protein Atlas [tissue]ENSG00000054267-ARID4B [tissue]
HPRD10661
Protein Interaction databases
BioGRIDARID4B
STRING (EMBL)ARID4B
ZODIACARID4B
Ontologies - Pathways
Litterature
PubMed53 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARID4B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:05 CEST 2021
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