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ARID5A (AT-rich interaction domain 5A)

Identity

Alias_namesAT rich interactive domain 5A (MRF1-like)
Alias_symbol (synonym)MRF-1
RP11-363D14
Other aliasMRF1
HGNC (Hugo) ARID5A
LocusID (NCBI) 10865
Atlas_Id 60487
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 96536719 and ends at 96552638 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
PAFAH1B2 (11q23.3) / ARID5A (2q11.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARID5A   17361
Cards
Entrez_Gene (NCBI)ARID5A  10865  AT-rich interaction domain 5A
AliasesMRF-1; MRF1; RP11-363D14
GeneCards (Weizmann)ARID5A
Ensembl hg19 (Hinxton)ENSG00000196843 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196843 [Gene_View]  chr2:96536719-96552638 [Contig_View]  ARID5A [Vega]
ICGC DataPortalENSG00000196843
TCGA cBioPortalARID5A
AceView (NCBI)ARID5A
Genatlas (Paris)ARID5A
WikiGenes10865
SOURCE (Princeton)ARID5A
Genetics Home Reference (NIH)ARID5A
Genomic and cartography
GoldenPath hg38 (UCSC)ARID5A  -     chr2:96536719-96552638 +  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARID5A  -     2q11.2   [Description]    (hg19-Feb_2009)
EnsemblARID5A - 2q11.2 [CytoView hg19]  ARID5A - 2q11.2 [CytoView hg38]
Mapping of homologs : NCBIARID5A [Mapview hg19]  ARID5A [Mapview hg38]
OMIM611583   
Gene and transcription
Genbank (Entrez)AI085152 AK300173 AK304566 AK307768 AY358167
RefSeq transcript (Entrez)NM_001319085 NM_001319087 NM_001319092 NM_001319093 NM_001319094 NM_001319096 NM_006673 NM_212481
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARID5A
Cluster EST : UnigeneHs.920 [ NCBI ]
CGAP (NCI)Hs.920
Alternative Splicing GalleryENSG00000196843
Gene ExpressionARID5A [ NCBI-GEO ]   ARID5A [ EBI - ARRAY_EXPRESS ]   ARID5A [ SEEK ]   ARID5A [ MEM ]
Gene Expression Viewer (FireBrowse)ARID5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10865
GTEX Portal (Tissue expression)ARID5A
Human Protein AtlasENSG00000196843-ARID5A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ03989   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ03989  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ03989
Splice isoforms : SwissVarQ03989
PhosPhoSitePlusQ03989
Domaine pattern : Prosite (Expaxy)ARID (PS51011)   
Domains : Interpro (EBI)ARID_dom   
Domain families : Pfam (Sanger)ARID (PF01388)   
Domain families : Pfam (NCBI)pfam01388   
Domain families : Smart (EMBL)BRIGHT (SM00501)  
Conserved Domain (NCBI)ARID5A
DMDM Disease mutations10865
Blocks (Seattle)ARID5A
SuperfamilyQ03989
Human Protein Atlas [tissue]ENSG00000196843-ARID5A [tissue]
Peptide AtlasQ03989
HPRD12481
IPIIPI00012918   IPI00478009   IPI00432762   IPI00414675   IPI00925645   
Protein Interaction databases
DIP (DOE-UCLA)Q03989
IntAct (EBI)Q03989
FunCoupENSG00000196843
BioGRIDARID5A
STRING (EMBL)ARID5A
ZODIACARID5A
Ontologies - Pathways
QuickGOQ03989
Ontology : AmiGOnegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  estrogen receptor binding  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  retinoid X receptor binding  thyroid hormone receptor binding  androgen receptor binding  cellular response to estrogen stimulus  
Ontology : EGO-EBInegative regulation of transcription from RNA polymerase II promoter  DNA binding  transcription corepressor activity  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  transcription factor binding  estrogen receptor binding  transcription regulatory region DNA binding  negative regulation of transcription, DNA-templated  retinoid X receptor binding  thyroid hormone receptor binding  androgen receptor binding  cellular response to estrogen stimulus  
NDEx NetworkARID5A
Atlas of Cancer Signalling NetworkARID5A
Wikipedia pathwaysARID5A
Orthology - Evolution
OrthoDB10865
GeneTree (enSembl)ENSG00000196843
Phylogenetic Trees/Animal Genes : TreeFamARID5A
HOVERGENQ03989
HOGENOMQ03989
Homologs : HomoloGeneARID5A
Homology/Alignments : Family Browser (UCSC)ARID5A
Gene fusions - Rearrangements
Tumor Fusion PortalARID5A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARID5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARID5A
dbVarARID5A
ClinVarARID5A
1000_GenomesARID5A 
Exome Variant ServerARID5A
ExAC (Exome Aggregation Consortium)ENSG00000196843
GNOMAD BrowserENSG00000196843
Genetic variants : HAPMAP10865
Genomic Variants (DGV)ARID5A [DGVbeta]
DECIPHERARID5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARID5A 
Mutations
ICGC Data PortalARID5A 
TCGA Data PortalARID5A 
Broad Tumor PortalARID5A
OASIS PortalARID5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARID5A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARID5A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARID5A
DgiDB (Drug Gene Interaction Database)ARID5A
DoCM (Curated mutations)ARID5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARID5A (select a term)
intoGenARID5A
Cancer3DARID5A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611583   
Orphanet
DisGeNETARID5A
MedgenARID5A
Genetic Testing Registry ARID5A
NextProtQ03989 [Medical]
TSGene10865
GENETestsARID5A
Target ValidationARID5A
Huge Navigator ARID5A [HugePedia]
snp3D : Map Gene to Disease10865
BioCentury BCIQARID5A
ClinGenARID5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10865
Chemical/Pharm GKB GenePA134937822
Clinical trialARID5A
Miscellaneous
canSAR (ICR)ARID5A (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARID5A
EVEXARID5A
GoPubMedARID5A
iHOPARID5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:55 CET 2017

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