Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARIH2OS (ariadne homolog 2 opposite strand)

Identity

Alias_namesC3orf71
chromosome 3 open reading frame 71
Other alias
HGNC (Hugo) ARIH2OS
LocusID (NCBI) 646450
Atlas_Id 60488
Location 3p21.31  [Link to chromosome band 3p21]
Location_base_pair Starts at 48955221 and ends at 48956818 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARIH2OS   34425
Cards
Entrez_Gene (NCBI)ARIH2OS  646450  ariadne homolog 2 opposite strand
AliasesC3orf71
GeneCards (Weizmann)ARIH2OS
Ensembl hg19 (Hinxton)ENSG00000221883 [Gene_View]  chr3:48955221-48956818 [Contig_View]  ARIH2OS [Vega]
Ensembl hg38 (Hinxton)ENSG00000221883 [Gene_View]  chr3:48955221-48956818 [Contig_View]  ARIH2OS [Vega]
ICGC DataPortalENSG00000221883
TCGA cBioPortalARIH2OS
AceView (NCBI)ARIH2OS
Genatlas (Paris)ARIH2OS
WikiGenes646450
SOURCE (Princeton)ARIH2OS
Genetics Home Reference (NIH)ARIH2OS
Genomic and cartography
GoldenPath hg19 (UCSC)ARIH2OS  -     chr3:48955221-48956818 -  3p21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARIH2OS  -     3p21.31   [Description]    (hg38-Dec_2013)
EnsemblARIH2OS - 3p21.31 [CytoView hg19]  ARIH2OS - 3p21.31 [CytoView hg38]
Mapping of homologs : NCBIARIH2OS [Mapview hg19]  ARIH2OS [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097724 DA461567
RefSeq transcript (Entrez)NM_001123040
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_022517 NW_004929309
Consensus coding sequences : CCDS (NCBI)ARIH2OS
Cluster EST : UnigeneHs.720727 [ NCBI ]
CGAP (NCI)Hs.720727
Alternative Splicing GalleryENSG00000221883
Gene ExpressionARIH2OS [ NCBI-GEO ]   ARIH2OS [ EBI - ARRAY_EXPRESS ]   ARIH2OS [ SEEK ]   ARIH2OS [ MEM ]
Gene Expression Viewer (FireBrowse)ARIH2OS [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)646450
GTEX Portal (Tissue expression)ARIH2OS
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N7S6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N7S6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N7S6
Splice isoforms : SwissVarQ8N7S6
PhosPhoSitePlusQ8N7S6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARIH2OS
DMDM Disease mutations646450
Blocks (Seattle)ARIH2OS
SuperfamilyQ8N7S6
Human Protein AtlasENSG00000221883
Peptide AtlasQ8N7S6
IPIIPI00167302   
Protein Interaction databases
DIP (DOE-UCLA)Q8N7S6
IntAct (EBI)Q8N7S6
FunCoupENSG00000221883
BioGRIDARIH2OS
STRING (EMBL)ARIH2OS
ZODIACARIH2OS
Ontologies - Pathways
QuickGOQ8N7S6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkARIH2OS
Atlas of Cancer Signalling NetworkARIH2OS
Wikipedia pathwaysARIH2OS
Orthology - Evolution
OrthoDB646450
GeneTree (enSembl)ENSG00000221883
Phylogenetic Trees/Animal Genes : TreeFamARIH2OS
HOVERGENQ8N7S6
HOGENOMQ8N7S6
Homologs : HomoloGeneARIH2OS
Homology/Alignments : Family Browser (UCSC)ARIH2OS
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARIH2OS [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARIH2OS
dbVarARIH2OS
ClinVarARIH2OS
1000_GenomesARIH2OS 
Exome Variant ServerARIH2OS
ExAC (Exome Aggregation Consortium)ARIH2OS (select the gene name)
Genetic variants : HAPMAP646450
Genomic Variants (DGV)ARIH2OS [DGVbeta]
DECIPHER (Syndromes)3:48955221-48956818  ENSG00000221883
CONAN: Copy Number AnalysisARIH2OS 
Mutations
ICGC Data PortalARIH2OS 
TCGA Data PortalARIH2OS 
Broad Tumor PortalARIH2OS
OASIS PortalARIH2OS [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARIH2OS
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARIH2OS
DgiDB (Drug Gene Interaction Database)ARIH2OS
DoCM (Curated mutations)ARIH2OS (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARIH2OS (select a term)
intoGenARIH2OS
Cancer3DARIH2OS(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARIH2OS
Genetic Testing Registry ARIH2OS
NextProtQ8N7S6 [Medical]
TSGene646450
GENETestsARIH2OS
Huge Navigator ARIH2OS [HugePedia]
snp3D : Map Gene to Disease646450
BioCentury BCIQARIH2OS
ClinGenARIH2OS
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD646450
Chemical/Pharm GKB GenePA162379716
Clinical trialARIH2OS
Miscellaneous
canSAR (ICR)ARIH2OS (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARIH2OS
EVEXARIH2OS
GoPubMedARIH2OS
iHOPARIH2OS
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 11:54:56 CET 2017

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