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ARL1 (ADP ribosylation factor like GTPase 1)

Identity

Alias_namesADP-ribosylation factor-like 1
Alias_symbol (synonym)ARFL1
Other alias
HGNC (Hugo) ARL1
LocusID (NCBI) 400
Atlas_Id 43155
Location 12q23.2  [Link to chromosome band 12q23]
Location_base_pair Starts at 101393120 and ends at 101407820 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL1   692
Cards
Entrez_Gene (NCBI)ARL1  400  ADP ribosylation factor like GTPase 1
AliasesARFL1
GeneCards (Weizmann)ARL1
Ensembl hg19 (Hinxton)ENSG00000120805 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000120805 [Gene_View]  chr12:101393120-101407820 [Contig_View]  ARL1 [Vega]
ICGC DataPortalENSG00000120805
TCGA cBioPortalARL1
AceView (NCBI)ARL1
Genatlas (Paris)ARL1
WikiGenes400
SOURCE (Princeton)ARL1
Genetics Home Reference (NIH)ARL1
Genomic and cartography
GoldenPath hg38 (UCSC)ARL1  -     chr12:101393120-101407820 -  12q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL1  -     12q23.2   [Description]    (hg19-Feb_2009)
EnsemblARL1 - 12q23.2 [CytoView hg19]  ARL1 - 12q23.2 [CytoView hg38]
Mapping of homologs : NCBIARL1 [Mapview hg19]  ARL1 [Mapview hg38]
OMIM603425   
Gene and transcription
Genbank (Entrez)AF493887 AI802608 AK001489 AK299062 AK301701
RefSeq transcript (Entrez)NM_001177 NM_001301068
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL1
Cluster EST : UnigeneHs.732900 [ NCBI ]
CGAP (NCI)Hs.732900
Alternative Splicing GalleryENSG00000120805
Gene ExpressionARL1 [ NCBI-GEO ]   ARL1 [ EBI - ARRAY_EXPRESS ]   ARL1 [ SEEK ]   ARL1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)400
GTEX Portal (Tissue expression)ARL1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40616   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40616  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40616
Splice isoforms : SwissVarP40616
PhosPhoSitePlusP40616
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL1
DMDM Disease mutations400
Blocks (Seattle)ARL1
PDB (SRS)1UPT    4DCN    5EE5    5J5C   
PDB (PDBSum)1UPT    4DCN    5EE5    5J5C   
PDB (IMB)1UPT    4DCN    5EE5    5J5C   
PDB (RSDB)1UPT    4DCN    5EE5    5J5C   
Structural Biology KnowledgeBase1UPT    4DCN    5EE5    5J5C   
SCOP (Structural Classification of Proteins)1UPT    4DCN    5EE5    5J5C   
CATH (Classification of proteins structures)1UPT    4DCN    5EE5    5J5C   
SuperfamilyP40616
Human Protein AtlasENSG00000120805
Peptide AtlasP40616
HPRD04574
IPIIPI00219518   IPI00908516   IPI00791961   IPI01022233   IPI01011723   IPI01022922   IPI01023041   
Protein Interaction databases
DIP (DOE-UCLA)P40616
IntAct (EBI)P40616
FunCoupENSG00000120805
BioGRIDARL1
STRING (EMBL)ARL1
ZODIACARL1
Ontologies - Pathways
QuickGOP40616
Ontology : AmiGOGTPase activity  GTP binding  cytoplasm  Golgi apparatus  trans-Golgi network  trans-Golgi network  cytosol  Golgi organization  small GTPase mediated signal transduction  enzyme activator activity  toxin metabolic process  protein domain specific binding  activation of phospholipase D activity  trans-Golgi network membrane  protein localization to Golgi apparatus  retrograde transport, endosome to Golgi  metal ion binding  Golgi vesicle transport  extracellular exosome  
Ontology : EGO-EBIGTPase activity  GTP binding  cytoplasm  Golgi apparatus  trans-Golgi network  trans-Golgi network  cytosol  Golgi organization  small GTPase mediated signal transduction  enzyme activator activity  toxin metabolic process  protein domain specific binding  activation of phospholipase D activity  trans-Golgi network membrane  protein localization to Golgi apparatus  retrograde transport, endosome to Golgi  metal ion binding  Golgi vesicle transport  extracellular exosome  
NDEx NetworkARL1
Atlas of Cancer Signalling NetworkARL1
Wikipedia pathwaysARL1
Orthology - Evolution
OrthoDB400
GeneTree (enSembl)ENSG00000120805
Phylogenetic Trees/Animal Genes : TreeFamARL1
HOVERGENP40616
HOGENOMP40616
Homologs : HomoloGeneARL1
Homology/Alignments : Family Browser (UCSC)ARL1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL1
dbVarARL1
ClinVarARL1
1000_GenomesARL1 
Exome Variant ServerARL1
ExAC (Exome Aggregation Consortium)ARL1 (select the gene name)
Genetic variants : HAPMAP400
Genomic Variants (DGV)ARL1 [DGVbeta]
DECIPHERARL1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL1 
Mutations
ICGC Data PortalARL1 
TCGA Data PortalARL1 
Broad Tumor PortalARL1
OASIS PortalARL1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL1
DgiDB (Drug Gene Interaction Database)ARL1
DoCM (Curated mutations)ARL1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL1 (select a term)
intoGenARL1
Cancer3DARL1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603425   
Orphanet
MedgenARL1
Genetic Testing Registry ARL1
NextProtP40616 [Medical]
TSGene400
GENETestsARL1
Target ValidationARL1
Huge Navigator ARL1 [HugePedia]
snp3D : Map Gene to Disease400
BioCentury BCIQARL1
ClinGenARL1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD400
Chemical/Pharm GKB GenePA24985
Clinical trialARL1
Miscellaneous
canSAR (ICR)ARL1 (select the gene name)
Probes
Litterature
PubMed39 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL1
EVEXARL1
GoPubMedARL1
iHOPARL1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 12:24:26 CEST 2017

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