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ARL11 (ADP ribosylation factor like GTPase 11)

Identity

Alias_namesADP-ribosylation factor like GTPase 11
Alias_symbol (synonym)ARLTS1
FLJ33930
Other alias
HGNC (Hugo) ARL11
LocusID (NCBI) 115761
Atlas_Id 705
Location 13q14.2  [Link to chromosome band 13q14]
Location_base_pair Starts at 49628299 and ends at 49633872 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SEC23A (14q21.1) / ARL11 (13q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL11   24046
Cards
Entrez_Gene (NCBI)ARL11  115761  ADP ribosylation factor like GTPase 11
AliasesARLTS1
GeneCards (Weizmann)ARL11
Ensembl hg19 (Hinxton)ENSG00000152213 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152213 [Gene_View]  chr13:49628299-49633872 [Contig_View]  ARL11 [Vega]
ICGC DataPortalENSG00000152213
TCGA cBioPortalARL11
AceView (NCBI)ARL11
Genatlas (Paris)ARL11
WikiGenes115761
SOURCE (Princeton)ARL11
Genetics Home Reference (NIH)ARL11
Genomic and cartography
GoldenPath hg38 (UCSC)ARL11  -     chr13:49628299-49633872 +  13q14.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL11  -     13q14.2   [Description]    (hg19-Feb_2009)
EnsemblARL11 - 13q14.2 [CytoView hg19]  ARL11 - 13q14.2 [CytoView hg38]
Mapping of homologs : NCBIARL11 [Mapview hg19]  ARL11 [Mapview hg38]
OMIM609351   
Gene and transcription
Genbank (Entrez)AF441378 AK091249 BC013150
RefSeq transcript (Entrez)NM_138450
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL11
Cluster EST : UnigeneHs.558599 [ NCBI ]
CGAP (NCI)Hs.558599
Alternative Splicing GalleryENSG00000152213
Gene ExpressionARL11 [ NCBI-GEO ]   ARL11 [ EBI - ARRAY_EXPRESS ]   ARL11 [ SEEK ]   ARL11 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115761
GTEX Portal (Tissue expression)ARL11
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ969Q4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ969Q4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ969Q4
Splice isoforms : SwissVarQ969Q4
PhosPhoSitePlusQ969Q4
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL11
DMDM Disease mutations115761
Blocks (Seattle)ARL11
SuperfamilyQ969Q4
Human Protein AtlasENSG00000152213
Peptide AtlasQ969Q4
HPRD12484
IPIIPI00056495   
Protein Interaction databases
DIP (DOE-UCLA)Q969Q4
IntAct (EBI)Q969Q4
FunCoupENSG00000152213
BioGRIDARL11
STRING (EMBL)ARL11
ZODIACARL11
Ontologies - Pathways
QuickGOQ969Q4
Ontology : AmiGOhematopoietic progenitor cell differentiation  protein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  protein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL11
Atlas of Cancer Signalling NetworkARL11
Wikipedia pathwaysARL11
Orthology - Evolution
OrthoDB115761
GeneTree (enSembl)ENSG00000152213
Phylogenetic Trees/Animal Genes : TreeFamARL11
HOVERGENQ969Q4
HOGENOMQ969Q4
Homologs : HomoloGeneARL11
Homology/Alignments : Family Browser (UCSC)ARL11
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL11 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL11
dbVarARL11
ClinVarARL11
1000_GenomesARL11 
Exome Variant ServerARL11
ExAC (Exome Aggregation Consortium)ARL11 (select the gene name)
Genetic variants : HAPMAP115761
Genomic Variants (DGV)ARL11 [DGVbeta]
DECIPHERARL11 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL11 
Mutations
ICGC Data PortalARL11 
TCGA Data PortalARL11 
Broad Tumor PortalARL11
OASIS PortalARL11 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL11  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL11
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL11
DgiDB (Drug Gene Interaction Database)ARL11
DoCM (Curated mutations)ARL11 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL11 (select a term)
intoGenARL11
Cancer3DARL11(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609351   
Orphanet10899   
MedgenARL11
Genetic Testing Registry ARL11
NextProtQ969Q4 [Medical]
TSGene115761
GENETestsARL11
Target ValidationARL11
Huge Navigator ARL11 [HugePedia]
snp3D : Map Gene to Disease115761
BioCentury BCIQARL11
ClinGenARL11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115761
Chemical/Pharm GKB GenePA134974627
Clinical trialARL11
Miscellaneous
canSAR (ICR)ARL11 (select the gene name)
Probes
Litterature
PubMed24 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL11
EVEXARL11
GoPubMedARL11
iHOPARL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:03 CEST 2017

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