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ARL13A (ADP ribosylation factor like GTPase 13A)

Identity

Alias_namesARL13
ADP-ribosylation factor-like 13
ADP-ribosylation factor like GTPase 13A
Other aliasdJ341D10.2
HGNC (Hugo) ARL13A
LocusID (NCBI) 392509
Atlas_Id 52954
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100969708 and ends at 100990831 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL13A (Xq22.1) / TRMT2B (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL13A   31709
Cards
Entrez_Gene (NCBI)ARL13A  392509  ADP ribosylation factor like GTPase 13A
AliasesARL13; dJ341D10.2
GeneCards (Weizmann)ARL13A
Ensembl hg19 (Hinxton)ENSG00000174225 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174225 [Gene_View]  chrX:100969708-100990831 [Contig_View]  ARL13A [Vega]
ICGC DataPortalENSG00000174225
TCGA cBioPortalARL13A
AceView (NCBI)ARL13A
Genatlas (Paris)ARL13A
WikiGenes392509
SOURCE (Princeton)ARL13A
Genetics Home Reference (NIH)ARL13A
Genomic and cartography
GoldenPath hg38 (UCSC)ARL13A  -     chrX:100969708-100990831 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL13A  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblARL13A - Xq22.1 [CytoView hg19]  ARL13A - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARL13A [Mapview hg19]  ARL13A [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK301813 AW118931 BC140808 BC144603 CD300373
RefSeq transcript (Entrez)NM_001162491
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL13A
Cluster EST : UnigeneHs.147237 [ NCBI ]
CGAP (NCI)Hs.147237
Alternative Splicing GalleryENSG00000174225
Gene ExpressionARL13A [ NCBI-GEO ]   ARL13A [ EBI - ARRAY_EXPRESS ]   ARL13A [ SEEK ]   ARL13A [ MEM ]
Gene Expression Viewer (FireBrowse)ARL13A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)392509
GTEX Portal (Tissue expression)ARL13A
Human Protein AtlasENSG00000174225-ARL13A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H913   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H913  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H913
Splice isoforms : SwissVarQ5H913
PhosPhoSitePlusQ5H913
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL13A
DMDM Disease mutations392509
Blocks (Seattle)ARL13A
SuperfamilyQ5H913
Human Protein Atlas [tissue]ENSG00000174225-ARL13A [tissue]
Peptide AtlasQ5H913
HPRD18526
IPIIPI00401767   IPI00970883   IPI01012748   IPI01013955   
Protein Interaction databases
DIP (DOE-UCLA)Q5H913
IntAct (EBI)Q5H913
FunCoupENSG00000174225
BioGRIDARL13A
STRING (EMBL)ARL13A
ZODIACARL13A
Ontologies - Pathways
QuickGOQ5H913
Ontology : AmiGOGTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIGTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL13A
Atlas of Cancer Signalling NetworkARL13A
Wikipedia pathwaysARL13A
Orthology - Evolution
OrthoDB392509
GeneTree (enSembl)ENSG00000174225
Phylogenetic Trees/Animal Genes : TreeFamARL13A
HOVERGENQ5H913
HOGENOMQ5H913
Homologs : HomoloGeneARL13A
Homology/Alignments : Family Browser (UCSC)ARL13A
Gene fusions - Rearrangements
Fusion : MitelmanARL13A/TRMT2B [Xq22.1/Xq22.1]  
Tumor Fusion PortalARL13A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL13A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL13A
dbVarARL13A
ClinVarARL13A
1000_GenomesARL13A 
Exome Variant ServerARL13A
ExAC (Exome Aggregation Consortium)ENSG00000174225
GNOMAD BrowserENSG00000174225
Genetic variants : HAPMAP392509
Genomic Variants (DGV)ARL13A [DGVbeta]
DECIPHERARL13A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL13A 
Mutations
ICGC Data PortalARL13A 
TCGA Data PortalARL13A 
Broad Tumor PortalARL13A
OASIS PortalARL13A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL13A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL13A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL13A
DgiDB (Drug Gene Interaction Database)ARL13A
DoCM (Curated mutations)ARL13A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL13A (select a term)
intoGenARL13A
Cancer3DARL13A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARL13A
MedgenARL13A
Genetic Testing Registry ARL13A
NextProtQ5H913 [Medical]
TSGene392509
GENETestsARL13A
Target ValidationARL13A
Huge Navigator ARL13A [HugePedia]
snp3D : Map Gene to Disease392509
BioCentury BCIQARL13A
ClinGenARL13A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD392509
Chemical/Pharm GKB GenePA134890660
Clinical trialARL13A
Miscellaneous
canSAR (ICR)ARL13A (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL13A
EVEXARL13A
GoPubMedARL13A
iHOPARL13A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:44 CET 2017

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