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ARL13B (ADP ribosylation factor like GTPase 13B)

Identity

Alias_namesARL2L1
ADP-ribosylation factor-like 2-like 1
ADP-ribosylation factor like GTPase 13B
Alias_symbol (synonym)DKFZp761H079
JBTS8
Other alias
HGNC (Hugo) ARL13B
LocusID (NCBI) 200894
Atlas_Id 56277
Location 3q11.1  [Link to chromosome band 3q11]
Location_base_pair Starts at 93980139 and ends at 94055678 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARL13B (3q11.1) / FRMD4B (3p14.1)SLC4A10 (2q24.2) / ARL13B (3q11.1)SPRR1B (1q21.3) / ARL13B (3q11.1)
TRAK1 (3p22.1) / ARL13B (3q11.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL13B   25419
Cards
Entrez_Gene (NCBI)ARL13B  200894  ADP ribosylation factor like GTPase 13B
AliasesARL2L1; JBTS8
GeneCards (Weizmann)ARL13B
Ensembl hg19 (Hinxton)ENSG00000169379 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169379 [Gene_View]  chr3:93980139-94055678 [Contig_View]  ARL13B [Vega]
ICGC DataPortalENSG00000169379
TCGA cBioPortalARL13B
AceView (NCBI)ARL13B
Genatlas (Paris)ARL13B
WikiGenes200894
SOURCE (Princeton)ARL13B
Genetics Home Reference (NIH)ARL13B
Genomic and cartography
GoldenPath hg38 (UCSC)ARL13B  -     chr3:93980139-94055678 +  3q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL13B  -     3q11.1   [Description]    (hg19-Feb_2009)
EnsemblARL13B - 3q11.1 [CytoView hg19]  ARL13B - 3q11.1 [CytoView hg38]
Mapping of homologs : NCBIARL13B [Mapview hg19]  ARL13B [Mapview hg38]
OMIM608922   612291   
Gene and transcription
Genbank (Entrez)AA775026 AK296994 AK299284 AL713789 BC015439
RefSeq transcript (Entrez)NM_001174150 NM_001174151 NM_001321328 NM_144996 NM_182896
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL13B
Cluster EST : UnigeneHs.533086 [ NCBI ]
CGAP (NCI)Hs.533086
Alternative Splicing GalleryENSG00000169379
Gene ExpressionARL13B [ NCBI-GEO ]   ARL13B [ EBI - ARRAY_EXPRESS ]   ARL13B [ SEEK ]   ARL13B [ MEM ]
Gene Expression Viewer (FireBrowse)ARL13B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)200894
GTEX Portal (Tissue expression)ARL13B
Human Protein AtlasENSG00000169379-ARL13B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ3SXY8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ3SXY8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ3SXY8
Splice isoforms : SwissVarQ3SXY8
PhosPhoSitePlusQ3SXY8
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL13B
DMDM Disease mutations200894
Blocks (Seattle)ARL13B
SuperfamilyQ3SXY8
Human Protein Atlas [tissue]ENSG00000169379-ARL13B [tissue]
Peptide AtlasQ3SXY8
HPRD12334
IPIIPI00472207   IPI00376959   IPI01009522   IPI00797369   IPI00947404   IPI00945430   IPI00945659   IPI00945797   
Protein Interaction databases
DIP (DOE-UCLA)Q3SXY8
IntAct (EBI)Q3SXY8
FunCoupENSG00000169379
BioGRIDARL13B
STRING (EMBL)ARL13B
ZODIACARL13B
Ontologies - Pathways
QuickGOQ3SXY8
Ontology : AmiGOheart looping  protein binding  GTP binding  cilium  cilium  cilium  axoneme  smoothened signaling pathway  small GTPase mediated signal transduction  dorsal/ventral pattern formation  response to lithium ion  neural tube patterning  interneuron migration from the subpallium to the cortex  formation of radial glial scaffolds  motile cilium  ciliary membrane  cilium assembly  left/right axis specification  non-motile cilium assembly  
Ontology : EGO-EBIheart looping  protein binding  GTP binding  cilium  cilium  cilium  axoneme  smoothened signaling pathway  small GTPase mediated signal transduction  dorsal/ventral pattern formation  response to lithium ion  neural tube patterning  interneuron migration from the subpallium to the cortex  formation of radial glial scaffolds  motile cilium  ciliary membrane  cilium assembly  left/right axis specification  non-motile cilium assembly  
NDEx NetworkARL13B
Atlas of Cancer Signalling NetworkARL13B
Wikipedia pathwaysARL13B
Orthology - Evolution
OrthoDB200894
GeneTree (enSembl)ENSG00000169379
Phylogenetic Trees/Animal Genes : TreeFamARL13B
HOVERGENQ3SXY8
HOGENOMQ3SXY8
Homologs : HomoloGeneARL13B
Homology/Alignments : Family Browser (UCSC)ARL13B
Gene fusions - Rearrangements
Tumor Fusion PortalARL13B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL13B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL13B
dbVarARL13B
ClinVarARL13B
1000_GenomesARL13B 
Exome Variant ServerARL13B
ExAC (Exome Aggregation Consortium)ENSG00000169379
GNOMAD BrowserENSG00000169379
Genetic variants : HAPMAP200894
Genomic Variants (DGV)ARL13B [DGVbeta]
DECIPHERARL13B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL13B 
Mutations
ICGC Data PortalARL13B 
TCGA Data PortalARL13B 
Broad Tumor PortalARL13B
OASIS PortalARL13B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL13B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL13B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL13B
DgiDB (Drug Gene Interaction Database)ARL13B
DoCM (Curated mutations)ARL13B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL13B (select a term)
intoGenARL13B
Cancer3DARL13B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608922    612291   
Orphanet1022   
DisGeNETARL13B
MedgenARL13B
Genetic Testing Registry ARL13B
NextProtQ3SXY8 [Medical]
TSGene200894
GENETestsARL13B
Target ValidationARL13B
Huge Navigator ARL13B [HugePedia]
snp3D : Map Gene to Disease200894
BioCentury BCIQARL13B
ClinGenARL13B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD200894
Chemical/Pharm GKB GenePA134975272
Clinical trialARL13B
Miscellaneous
canSAR (ICR)ARL13B (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL13B
EVEXARL13B
GoPubMedARL13B
iHOPARL13B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:45 CET 2017

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