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ARL15 (ADP ribosylation factor like GTPase 15)

Identity

Alias_namesARFRP2
ADP-ribosylation factor related protein 2
ADP-ribosylation factor like GTPase 15
Alias_symbol (synonym)FLJ20051
Other alias
HGNC (Hugo) ARL15
LocusID (NCBI) 54622
Atlas_Id 60494
Location 5q11.2  [Link to chromosome band 5q11]
Location_base_pair Starts at 53884784 and ends at 54310573 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL15 (5q11.2) / ARL15 (5q11.2)ARL15 (5q11.2) / ASCC3 (6q16.3)ARL15 (5q11.2) / CA13 (8q21.2)
ARL15 (5q11.2) / CDC42SE2 (5q23.3)ARL15 (5q11.2) / GPI (19q13.11)ARL15 (5q11.2) / KCNIP4 (4p15.31)
ARL15 (5q11.2) / MOCS2 (5q11.2)ARL15 (5q11.2) / PPP2R2A (8p21.2)CEP95 (17q23.3) / ARL15 (5q11.2)
HSPA9 (5q31.2) / ARL15 (5q11.2)LRPPRC (2p21) / ARL15 (5q11.2)NOLC1 (10q24.32) / ARL15 (5q11.2)
UBR2 (6p21.1) / ARL15 (5q11.2)ZFHX3 (16q22.2) / ARL15 (5q11.2)ARL15 CDC42SE2
ARL15 MOCS2HSPA9 ARL15ZFHX3 ARL15

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL15   25945
Cards
Entrez_Gene (NCBI)ARL15  54622  ADP ribosylation factor like GTPase 15
AliasesARFRP2
GeneCards (Weizmann)ARL15
Ensembl hg19 (Hinxton)ENSG00000185305 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185305 [Gene_View]  chr5:53884784-54310573 [Contig_View]  ARL15 [Vega]
ICGC DataPortalENSG00000185305
TCGA cBioPortalARL15
AceView (NCBI)ARL15
Genatlas (Paris)ARL15
WikiGenes54622
SOURCE (Princeton)ARL15
Genetics Home Reference (NIH)ARL15
Genomic and cartography
GoldenPath hg38 (UCSC)ARL15  -     chr5:53884784-54310573 -  5q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL15  -     5q11.2   [Description]    (hg19-Feb_2009)
EnsemblARL15 - 5q11.2 [CytoView hg19]  ARL15 - 5q11.2 [CytoView hg38]
Mapping of homologs : NCBIARL15 [Mapview hg19]  ARL15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK000058 AK290886 AK311482 BC026093 CR457225
RefSeq transcript (Entrez)NM_019087
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL15
Cluster EST : UnigeneHs.659125 [ NCBI ]
CGAP (NCI)Hs.659125
Alternative Splicing GalleryENSG00000185305
Gene ExpressionARL15 [ NCBI-GEO ]   ARL15 [ EBI - ARRAY_EXPRESS ]   ARL15 [ SEEK ]   ARL15 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54622
GTEX Portal (Tissue expression)ARL15
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NXU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NXU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NXU5
Splice isoforms : SwissVarQ9NXU5
PhosPhoSitePlusQ9NXU5
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL15
DMDM Disease mutations54622
Blocks (Seattle)ARL15
SuperfamilyQ9NXU5
Human Protein AtlasENSG00000185305
Peptide AtlasQ9NXU5
HPRD12471
IPIIPI00005163   IPI00982146   
Protein Interaction databases
DIP (DOE-UCLA)Q9NXU5
IntAct (EBI)Q9NXU5
FunCoupENSG00000185305
BioGRIDARL15
STRING (EMBL)ARL15
ZODIACARL15
Ontologies - Pathways
QuickGOQ9NXU5
Ontology : AmiGOmolecular_function  GTP binding  intracellular  small GTPase mediated signal transduction  biological_process  extracellular exosome  
Ontology : EGO-EBImolecular_function  GTP binding  intracellular  small GTPase mediated signal transduction  biological_process  extracellular exosome  
NDEx NetworkARL15
Atlas of Cancer Signalling NetworkARL15
Wikipedia pathwaysARL15
Orthology - Evolution
OrthoDB54622
GeneTree (enSembl)ENSG00000185305
Phylogenetic Trees/Animal Genes : TreeFamARL15
HOVERGENQ9NXU5
HOGENOMQ9NXU5
Homologs : HomoloGeneARL15
Homology/Alignments : Family Browser (UCSC)ARL15
Gene fusions - Rearrangements
Fusion: TCGAARL15 CDC42SE2
Fusion: TCGAARL15 MOCS2
Fusion: TCGAHSPA9 ARL15
Fusion: TCGAZFHX3 ARL15
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL15 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL15
dbVarARL15
ClinVarARL15
1000_GenomesARL15 
Exome Variant ServerARL15
ExAC (Exome Aggregation Consortium)ARL15 (select the gene name)
Genetic variants : HAPMAP54622
Genomic Variants (DGV)ARL15 [DGVbeta]
DECIPHERARL15 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL15 
Mutations
ICGC Data PortalARL15 
TCGA Data PortalARL15 
Broad Tumor PortalARL15
OASIS PortalARL15 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL15  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL15
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL15
DgiDB (Drug Gene Interaction Database)ARL15
DoCM (Curated mutations)ARL15 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL15 (select a term)
intoGenARL15
Cancer3DARL15(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARL15
Genetic Testing Registry ARL15
NextProtQ9NXU5 [Medical]
TSGene54622
GENETestsARL15
Target ValidationARL15
Huge Navigator ARL15 [HugePedia]
snp3D : Map Gene to Disease54622
BioCentury BCIQARL15
ClinGenARL15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54622
Chemical/Pharm GKB GenePA134960964
Clinical trialARL15
Miscellaneous
canSAR (ICR)ARL15 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL15
EVEXARL15
GoPubMedARL15
iHOPARL15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:44 CEST 2017

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