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ARL16 (ADP ribosylation factor like GTPase 16)

Identity

Alias_namesADP-ribosylation factor like GTPase 16
Other alias-
HGNC (Hugo) ARL16
LocusID (NCBI) 339231
Atlas_Id 60495
Location 17q25.3  [Link to chromosome band 17q25]
Location_base_pair Starts at 81681165 and ends at 81683924 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL16 (17q25.3) / C16orf70 (16q22.1)ARL16 (17q25.3) / LPIN1 (2p25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL16   27902
Cards
Entrez_Gene (NCBI)ARL16  339231  ADP ribosylation factor like GTPase 16
Aliases
GeneCards (Weizmann)ARL16
Ensembl hg19 (Hinxton)ENSG00000214087 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000214087 [Gene_View]  chr17:81681165-81683924 [Contig_View]  ARL16 [Vega]
ICGC DataPortalENSG00000214087
TCGA cBioPortalARL16
AceView (NCBI)ARL16
Genatlas (Paris)ARL16
WikiGenes339231
SOURCE (Princeton)ARL16
Genetics Home Reference (NIH)ARL16
Genomic and cartography
GoldenPath hg38 (UCSC)ARL16  -     chr17:81681165-81683924 -  17q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL16  -     17q25.3   [Description]    (hg19-Feb_2009)
EnsemblARL16 - 17q25.3 [CytoView hg19]  ARL16 - 17q25.3 [CytoView hg38]
Mapping of homologs : NCBIARL16 [Mapview hg19]  ARL16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI149177 AK095847 AK303526 AK304718 BC029633
RefSeq transcript (Entrez)NM_001040025 NM_001329608 NM_001329609
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL16
Cluster EST : UnigeneHs.658789 [ NCBI ]
CGAP (NCI)Hs.658789
Alternative Splicing GalleryENSG00000214087
Gene ExpressionARL16 [ NCBI-GEO ]   ARL16 [ EBI - ARRAY_EXPRESS ]   ARL16 [ SEEK ]   ARL16 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339231
GTEX Portal (Tissue expression)ARL16
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ0P5N6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ0P5N6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ0P5N6
Splice isoforms : SwissVarQ0P5N6
PhosPhoSitePlusQ0P5N6
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL16
DMDM Disease mutations339231
Blocks (Seattle)ARL16
SuperfamilyQ0P5N6
Human Protein AtlasENSG00000214087
Peptide AtlasQ0P5N6
IPIIPI00242972   
Protein Interaction databases
DIP (DOE-UCLA)Q0P5N6
IntAct (EBI)Q0P5N6
FunCoupENSG00000214087
BioGRIDARL16
STRING (EMBL)ARL16
ZODIACARL16
Ontologies - Pathways
QuickGOQ0P5N6
Ontology : AmiGOprotein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIprotein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL16
Atlas of Cancer Signalling NetworkARL16
Wikipedia pathwaysARL16
Orthology - Evolution
OrthoDB339231
GeneTree (enSembl)ENSG00000214087
Phylogenetic Trees/Animal Genes : TreeFamARL16
HOVERGENQ0P5N6
HOGENOMQ0P5N6
Homologs : HomoloGeneARL16
Homology/Alignments : Family Browser (UCSC)ARL16
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL16
dbVarARL16
ClinVarARL16
1000_GenomesARL16 
Exome Variant ServerARL16
ExAC (Exome Aggregation Consortium)ARL16 (select the gene name)
Genetic variants : HAPMAP339231
Genomic Variants (DGV)ARL16 [DGVbeta]
DECIPHERARL16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL16 
Mutations
ICGC Data PortalARL16 
TCGA Data PortalARL16 
Broad Tumor PortalARL16
OASIS PortalARL16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL16
DgiDB (Drug Gene Interaction Database)ARL16
DoCM (Curated mutations)ARL16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL16 (select a term)
intoGenARL16
Cancer3DARL16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARL16
Genetic Testing Registry ARL16
NextProtQ0P5N6 [Medical]
TSGene339231
GENETestsARL16
Target ValidationARL16
Huge Navigator ARL16 [HugePedia]
snp3D : Map Gene to Disease339231
BioCentury BCIQARL16
ClinGenARL16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339231
Chemical/Pharm GKB GenePA142672583
Clinical trialARL16
Miscellaneous
canSAR (ICR)ARL16 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL16
EVEXARL16
GoPubMedARL16
iHOPARL16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:45 CEST 2017

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