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ARL17B (ADP ribosylation factor like GTPase 17B)

Identity

Alias_namesARL17
ADP-ribosylation factor-like 17
ADP-ribosylation factor-like 17B
Other aliasARL17A
HGNC (Hugo) ARL17B
LocusID (NCBI) 100506084
Atlas_Id 54135
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 46339398 and ends at 46361768 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
KANSL1 (17q21.31) / ARL17B (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL17B   32387
Cards
Entrez_Gene (NCBI)ARL17B  100506084  ADP ribosylation factor like GTPase 17B
AliasesARL17; ARL17A
GeneCards (Weizmann)ARL17B
Ensembl hg19 (Hinxton)ENSG00000228696 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228696 [Gene_View]  chr17:46339398-46361768 [Contig_View]  ARL17B [Vega]
ICGC DataPortalENSG00000228696
TCGA cBioPortalARL17B
AceView (NCBI)ARL17B
Genatlas (Paris)ARL17B
WikiGenes100506084
SOURCE (Princeton)ARL17B
Genetics Home Reference (NIH)ARL17B
Genomic and cartography
GoldenPath hg38 (UCSC)ARL17B  -     chr17:46339398-46361768 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL17B  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblARL17B - 17q21.31 [CytoView hg19]  ARL17B - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIARL17B [Mapview hg19]  ARL17B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB209344 AF086297 AF208864 AF493886 AK289590
RefSeq transcript (Entrez)NM_001039083 NM_001103154 NM_001330240
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL17B
Cluster EST : UnigeneHs.733127 [ NCBI ]
CGAP (NCI)Hs.733127
Alternative Splicing GalleryENSG00000228696
Gene ExpressionARL17B [ NCBI-GEO ]   ARL17B [ EBI - ARRAY_EXPRESS ]   ARL17B [ SEEK ]   ARL17B [ MEM ]
Gene Expression Viewer (FireBrowse)ARL17B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100506084
GTEX Portal (Tissue expression)ARL17B
Human Protein AtlasENSG00000228696-ARL17B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IVW1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IVW1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IVW1
Splice isoforms : SwissVarQ8IVW1
PhosPhoSitePlusQ8IVW1
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)ARL17_C    P-loop_NTPase    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)    ARL17 (PF15840)   
Domain families : Pfam (NCBI)pfam00025    pfam15840   
Conserved Domain (NCBI)ARL17B
DMDM Disease mutations100506084
Blocks (Seattle)ARL17B
SuperfamilyQ8IVW1
Human Protein Atlas [tissue]ENSG00000228696-ARL17B [tissue]
Peptide AtlasQ8IVW1
IPIIPI00785094   IPI00386996   IPI00386998   IPI01020938   IPI00031840   IPI01022845   IPI01015360   
Protein Interaction databases
DIP (DOE-UCLA)Q8IVW1
IntAct (EBI)Q8IVW1
FunCoupENSG00000228696
BioGRIDARL17B
STRING (EMBL)ARL17B
ZODIACARL17B
Ontologies - Pathways
QuickGOQ8IVW1
Ontology : AmiGOGTP binding  Golgi apparatus  small GTPase mediated signal transduction  protein transport  vesicle-mediated transport  
Ontology : EGO-EBIGTP binding  Golgi apparatus  small GTPase mediated signal transduction  protein transport  vesicle-mediated transport  
NDEx NetworkARL17B
Atlas of Cancer Signalling NetworkARL17B
Wikipedia pathwaysARL17B
Orthology - Evolution
OrthoDB100506084
GeneTree (enSembl)ENSG00000228696
Phylogenetic Trees/Animal Genes : TreeFamARL17B
HOVERGENQ8IVW1
HOGENOMQ8IVW1
Homologs : HomoloGeneARL17B
Homology/Alignments : Family Browser (UCSC)ARL17B
Gene fusions - Rearrangements
Fusion : MitelmanKANSL1/ARL17B [17q21.31/17q21.31]  [t(17;17)(q21;q21)]  
Tumor Fusion PortalARL17B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL17B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL17B
dbVarARL17B
ClinVarARL17B
1000_GenomesARL17B 
Exome Variant ServerARL17B
ExAC (Exome Aggregation Consortium)ENSG00000228696
GNOMAD BrowserENSG00000228696
Genetic variants : HAPMAP100506084
Genomic Variants (DGV)ARL17B [DGVbeta]
DECIPHERARL17B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL17B 
Mutations
ICGC Data PortalARL17B 
TCGA Data PortalARL17B 
Broad Tumor PortalARL17B
OASIS PortalARL17B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL17B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL17B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL17B
DgiDB (Drug Gene Interaction Database)ARL17B
DoCM (Curated mutations)ARL17B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL17B (select a term)
intoGenARL17B
Cancer3DARL17B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARL17B
MedgenARL17B
Genetic Testing Registry ARL17B
NextProtQ8IVW1 [Medical]
TSGene100506084
GENETestsARL17B
Target ValidationARL17B
Huge Navigator ARL17B [HugePedia]
snp3D : Map Gene to Disease100506084
BioCentury BCIQARL17B
ClinGenARL17B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100506084
Chemical/Pharm GKB GenePA165431478
Clinical trialARL17B
Miscellaneous
canSAR (ICR)ARL17B (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL17B
EVEXARL17B
GoPubMedARL17B
iHOPARL17B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 14:03:45 CET 2017

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