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ARL2BP (ADP ribosylation factor like GTPase 2 binding protein)

Identity

Alias_namesRP66
retinitis pigmentosa 66 (autosomal recessive)
ADP-ribosylation factor-like 2 binding protein
Alias_symbol (synonym)BART1
BART
Other alias
HGNC (Hugo) ARL2BP
LocusID (NCBI) 23568
Atlas_Id 52555
Location 16q13  [Link to chromosome band 16q13]
Location_base_pair Starts at 57279038 and ends at 57287545 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARL2BP (16q13) / PAXBP1 (21q22.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL2BP   17146
Cards
Entrez_Gene (NCBI)ARL2BP  23568  ADP ribosylation factor like GTPase 2 binding protein
AliasesBART; BART1; RP66
GeneCards (Weizmann)ARL2BP
Ensembl hg19 (Hinxton)ENSG00000102931 [Gene_View]  chr16:57279038-57287545 [Contig_View]  ARL2BP [Vega]
Ensembl hg38 (Hinxton)ENSG00000102931 [Gene_View]  chr16:57279038-57287545 [Contig_View]  ARL2BP [Vega]
ICGC DataPortalENSG00000102931
TCGA cBioPortalARL2BP
AceView (NCBI)ARL2BP
Genatlas (Paris)ARL2BP
WikiGenes23568
SOURCE (Princeton)ARL2BP
Genetics Home Reference (NIH)ARL2BP
Genomic and cartography
GoldenPath hg19 (UCSC)ARL2BP  -     chr16:57279038-57287545 +  16q13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARL2BP  -     16q13   [Description]    (hg38-Dec_2013)
EnsemblARL2BP - 16q13 [CytoView hg19]  ARL2BP - 16q13 [CytoView hg38]
Mapping of homologs : NCBIARL2BP [Mapview hg19]  ARL2BP [Mapview hg38]
OMIM615407   615434   
Gene and transcription
Genbank (Entrez)AF126062 AK075050 AK298758 AK311018 BC003087
RefSeq transcript (Entrez)NM_012106
RefSeq genomic (Entrez)NC_000016 NC_018927 NG_033905 NT_010498 NW_004929402
Consensus coding sequences : CCDS (NCBI)ARL2BP
Cluster EST : UnigeneHs.719024 [ NCBI ]
CGAP (NCI)Hs.719024
Alternative Splicing GalleryENSG00000102931
Gene ExpressionARL2BP [ NCBI-GEO ]   ARL2BP [ EBI - ARRAY_EXPRESS ]   ARL2BP [ SEEK ]   ARL2BP [ MEM ]
Gene Expression Viewer (FireBrowse)ARL2BP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23568
GTEX Portal (Tissue expression)ARL2BP
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y2Y0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y2Y0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y2Y0
Splice isoforms : SwissVarQ9Y2Y0
PhosPhoSitePlusQ9Y2Y0
Domains : Interpro (EBI)ARF-like_2-bdp_dom   
Domain families : Pfam (Sanger)ARL2_Bind_BART (PF11527)   
Domain families : Pfam (NCBI)pfam11527   
Conserved Domain (NCBI)ARL2BP
DMDM Disease mutations23568
Blocks (Seattle)ARL2BP
PDB (SRS)2K9A    3DOE    3DOF   
PDB (PDBSum)2K9A    3DOE    3DOF   
PDB (IMB)2K9A    3DOE    3DOF   
PDB (RSDB)2K9A    3DOE    3DOF   
Structural Biology KnowledgeBase2K9A    3DOE    3DOF   
SCOP (Structural Classification of Proteins)2K9A    3DOE    3DOF   
CATH (Classification of proteins structures)2K9A    3DOE    3DOF   
SuperfamilyQ9Y2Y0
Human Protein AtlasENSG00000102931
Peptide AtlasQ9Y2Y0
HPRD09808
IPIIPI00015866   IPI00845377   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y2Y0
IntAct (EBI)Q9Y2Y0
FunCoupENSG00000102931
BioGRIDARL2BP
STRING (EMBL)ARL2BP
ZODIACARL2BP
Ontologies - Pathways
QuickGOQ9Y2Y0
Ontology : AmiGOtranscription coactivator activity  protein binding  nucleus  mitochondrial intermembrane space  mitochondrial matrix  centrosome  spindle  cytosol  cilium  signal transduction  midbody  GTPase regulator activity  positive regulation of tyrosine phosphorylation of Stat3 protein  regulation of catalytic activity  regulation of insulin secretion  maintenance of protein location in nucleus  regulation of nucleic acid-templated transcription  
Ontology : EGO-EBItranscription coactivator activity  protein binding  nucleus  mitochondrial intermembrane space  mitochondrial matrix  centrosome  spindle  cytosol  cilium  signal transduction  midbody  GTPase regulator activity  positive regulation of tyrosine phosphorylation of Stat3 protein  regulation of catalytic activity  regulation of insulin secretion  maintenance of protein location in nucleus  regulation of nucleic acid-templated transcription  
NDEx NetworkARL2BP
Atlas of Cancer Signalling NetworkARL2BP
Wikipedia pathwaysARL2BP
Orthology - Evolution
OrthoDB23568
GeneTree (enSembl)ENSG00000102931
Phylogenetic Trees/Animal Genes : TreeFamARL2BP
HOVERGENQ9Y2Y0
HOGENOMQ9Y2Y0
Homologs : HomoloGeneARL2BP
Homology/Alignments : Family Browser (UCSC)ARL2BP
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL2BP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL2BP
dbVarARL2BP
ClinVarARL2BP
1000_GenomesARL2BP 
Exome Variant ServerARL2BP
ExAC (Exome Aggregation Consortium)ARL2BP (select the gene name)
Genetic variants : HAPMAP23568
Genomic Variants (DGV)ARL2BP [DGVbeta]
DECIPHER (Syndromes)16:57279038-57287545  ENSG00000102931
CONAN: Copy Number AnalysisARL2BP 
Mutations
ICGC Data PortalARL2BP 
TCGA Data PortalARL2BP 
Broad Tumor PortalARL2BP
OASIS PortalARL2BP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL2BP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL2BP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL2BP
DgiDB (Drug Gene Interaction Database)ARL2BP
DoCM (Curated mutations)ARL2BP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL2BP (select a term)
intoGenARL2BP
Cancer3DARL2BP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615407    615434   
Orphanet659   
MedgenARL2BP
Genetic Testing Registry ARL2BP
NextProtQ9Y2Y0 [Medical]
TSGene23568
GENETestsARL2BP
Huge Navigator ARL2BP [HugePedia]
snp3D : Map Gene to Disease23568
BioCentury BCIQARL2BP
ClinGenARL2BP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23568
Chemical/Pharm GKB GenePA134904608
Clinical trialARL2BP
Miscellaneous
canSAR (ICR)ARL2BP (select the gene name)
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL2BP
EVEXARL2BP
GoPubMedARL2BP
iHOPARL2BP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:03 CEST 2017

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