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ARL4A (ADP ribosylation factor like GTPase 4A)

Identity

Alias_namesARL4
ADP-ribosylation factor-like 4
ADP-ribosylation factor-like 4A
Other alias
HGNC (Hugo) ARL4A
LocusID (NCBI) 10124
Atlas_Id 53967
Location 7p21.3  [Link to chromosome band 7p21]
Location_base_pair Starts at 12686827 and ends at 12690933 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SPINK1 (5q32) / ARL4A (7p21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL4A   695
Cards
Entrez_Gene (NCBI)ARL4A  10124  ADP ribosylation factor like GTPase 4A
AliasesARL4
GeneCards (Weizmann)ARL4A
Ensembl hg19 (Hinxton)ENSG00000122644 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000122644 [Gene_View]  chr7:12686827-12690933 [Contig_View]  ARL4A [Vega]
ICGC DataPortalENSG00000122644
TCGA cBioPortalARL4A
AceView (NCBI)ARL4A
Genatlas (Paris)ARL4A
WikiGenes10124
SOURCE (Princeton)ARL4A
Genetics Home Reference (NIH)ARL4A
Genomic and cartography
GoldenPath hg38 (UCSC)ARL4A  -     chr7:12686827-12690933 +  7p21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL4A  -     7p21.3   [Description]    (hg19-Feb_2009)
EnsemblARL4A - 7p21.3 [CytoView hg19]  ARL4A - 7p21.3 [CytoView hg38]
Mapping of homologs : NCBIARL4A [Mapview hg19]  ARL4A [Mapview hg38]
OMIM604786   
Gene and transcription
Genbank (Entrez)AF493890 AK313233 AU076407 AW022162 AW079064
RefSeq transcript (Entrez)NM_001037164 NM_001195396 NM_005738 NM_212460
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL4A
Cluster EST : UnigeneHs.245540 [ NCBI ]
CGAP (NCI)Hs.245540
Alternative Splicing GalleryENSG00000122644
Gene ExpressionARL4A [ NCBI-GEO ]   ARL4A [ EBI - ARRAY_EXPRESS ]   ARL4A [ SEEK ]   ARL4A [ MEM ]
Gene Expression Viewer (FireBrowse)ARL4A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10124
GTEX Portal (Tissue expression)ARL4A
Protein : pattern, domain, 3D structure
UniProt/SwissProtP40617   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP40617  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP40617
Splice isoforms : SwissVarP40617
PhosPhoSitePlusP40617
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL4A
DMDM Disease mutations10124
Blocks (Seattle)ARL4A
SuperfamilyP40617
Human Protein AtlasENSG00000122644
Peptide AtlasP40617
HPRD11987
IPIIPI00029596   IPI00893800   
Protein Interaction databases
DIP (DOE-UCLA)P40617
IntAct (EBI)P40617
FunCoupENSG00000122644
BioGRIDARL4A
STRING (EMBL)ARL4A
ZODIACARL4A
Ontologies - Pathways
QuickGOP40617
Ontology : AmiGOprotein binding  GTP binding  nucleus  nucleoplasm  nucleolus  cytosol  plasma membrane  small GTPase mediated signal transduction  brown fat cell differentiation  
Ontology : EGO-EBIprotein binding  GTP binding  nucleus  nucleoplasm  nucleolus  cytosol  plasma membrane  small GTPase mediated signal transduction  brown fat cell differentiation  
NDEx NetworkARL4A
Atlas of Cancer Signalling NetworkARL4A
Wikipedia pathwaysARL4A
Orthology - Evolution
OrthoDB10124
GeneTree (enSembl)ENSG00000122644
Phylogenetic Trees/Animal Genes : TreeFamARL4A
HOVERGENP40617
HOGENOMP40617
Homologs : HomoloGeneARL4A
Homology/Alignments : Family Browser (UCSC)ARL4A
Gene fusions - Rearrangements
Fusion Cancer (Beijing)SPINK1 [5q32]  -  ARL4A [7p21.3]  [FUSC003178]
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL4A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL4A
dbVarARL4A
ClinVarARL4A
1000_GenomesARL4A 
Exome Variant ServerARL4A
ExAC (Exome Aggregation Consortium)ARL4A (select the gene name)
Genetic variants : HAPMAP10124
Genomic Variants (DGV)ARL4A [DGVbeta]
DECIPHERARL4A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL4A 
Mutations
ICGC Data PortalARL4A 
TCGA Data PortalARL4A 
Broad Tumor PortalARL4A
OASIS PortalARL4A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL4A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL4A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL4A
DgiDB (Drug Gene Interaction Database)ARL4A
DoCM (Curated mutations)ARL4A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL4A (select a term)
intoGenARL4A
Cancer3DARL4A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604786   
Orphanet
MedgenARL4A
Genetic Testing Registry ARL4A
NextProtP40617 [Medical]
TSGene10124
GENETestsARL4A
Huge Navigator ARL4A [HugePedia]
snp3D : Map Gene to Disease10124
BioCentury BCIQARL4A
ClinGenARL4A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10124
Chemical/Pharm GKB GenePA24988
Clinical trialARL4A
Miscellaneous
canSAR (ICR)ARL4A (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL4A
EVEXARL4A
GoPubMedARL4A
iHOPARL4A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:44 CEST 2017

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