Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARL4C (ADP ribosylation factor like GTPase 4C)

Identity

Alias_namesARL7
ADP-ribosylation factor-like 7
ADP-ribosylation factor-like 4C
Alias_symbol (synonym)LAK
Other alias
HGNC (Hugo) ARL4C
LocusID (NCBI) 10123
Atlas_Id 55569
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 234493041 and ends at 234497053 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RASAL1 (12q24.13) / ARL4C (2q37.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL4C   698
Cards
Entrez_Gene (NCBI)ARL4C  10123  ADP ribosylation factor like GTPase 4C
AliasesARL7; LAK
GeneCards (Weizmann)ARL4C
Ensembl hg19 (Hinxton)ENSG00000188042 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188042 [Gene_View]  chr2:234493041-234497053 [Contig_View]  ARL4C [Vega]
ICGC DataPortalENSG00000188042
TCGA cBioPortalARL4C
AceView (NCBI)ARL4C
Genatlas (Paris)ARL4C
WikiGenes10123
SOURCE (Princeton)ARL4C
Genetics Home Reference (NIH)ARL4C
Genomic and cartography
GoldenPath hg38 (UCSC)ARL4C  -     chr2:234493041-234497053 -  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL4C  -     2q37.1   [Description]    (hg19-Feb_2009)
EnsemblARL4C - 2q37.1 [CytoView hg19]  ARL4C - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIARL4C [Mapview hg19]  ARL4C [Mapview hg38]
OMIM604787   
Gene and transcription
Genbank (Entrez)AB016811 AF493892 AJ579850 AJ579851 AK314119
RefSeq transcript (Entrez)NM_001282431 NM_005737
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL4C
Cluster EST : UnigeneHs.730678 [ NCBI ]
CGAP (NCI)Hs.730678
Alternative Splicing GalleryENSG00000188042
Gene ExpressionARL4C [ NCBI-GEO ]   ARL4C [ EBI - ARRAY_EXPRESS ]   ARL4C [ SEEK ]   ARL4C [ MEM ]
Gene Expression Viewer (FireBrowse)ARL4C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10123
GTEX Portal (Tissue expression)ARL4C
Protein : pattern, domain, 3D structure
UniProt/SwissProtP56559   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP56559  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP56559
Splice isoforms : SwissVarP56559
PhosPhoSitePlusP56559
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL4C
DMDM Disease mutations10123
Blocks (Seattle)ARL4C
SuperfamilyP56559
Human Protein AtlasENSG00000188042
Peptide AtlasP56559
HPRD11988
IPIIPI00936024   IPI00010149   
Protein Interaction databases
DIP (DOE-UCLA)P56559
IntAct (EBI)P56559
FunCoupENSG00000188042
BioGRIDARL4C
STRING (EMBL)ARL4C
ZODIACARL4C
Ontologies - Pathways
QuickGOP56559
Ontology : AmiGOGTPase activity  protein binding  GTP binding  nucleus  cytoplasm  cytosol  plasma membrane  small GTPase mediated signal transduction  filopodium  endocytic recycling  alpha-tubulin binding  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  nucleus  cytoplasm  cytosol  plasma membrane  small GTPase mediated signal transduction  filopodium  endocytic recycling  alpha-tubulin binding  
NDEx NetworkARL4C
Atlas of Cancer Signalling NetworkARL4C
Wikipedia pathwaysARL4C
Orthology - Evolution
OrthoDB10123
GeneTree (enSembl)ENSG00000188042
Phylogenetic Trees/Animal Genes : TreeFamARL4C
HOVERGENP56559
HOGENOMP56559
Homologs : HomoloGeneARL4C
Homology/Alignments : Family Browser (UCSC)ARL4C
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL4C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL4C
dbVarARL4C
ClinVarARL4C
1000_GenomesARL4C 
Exome Variant ServerARL4C
ExAC (Exome Aggregation Consortium)ARL4C (select the gene name)
Genetic variants : HAPMAP10123
Genomic Variants (DGV)ARL4C [DGVbeta]
DECIPHERARL4C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL4C 
Mutations
ICGC Data PortalARL4C 
TCGA Data PortalARL4C 
Broad Tumor PortalARL4C
OASIS PortalARL4C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL4C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL4C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL4C
DgiDB (Drug Gene Interaction Database)ARL4C
DoCM (Curated mutations)ARL4C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL4C (select a term)
intoGenARL4C
Cancer3DARL4C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM604787   
Orphanet
MedgenARL4C
Genetic Testing Registry ARL4C
NextProtP56559 [Medical]
TSGene10123
GENETestsARL4C
Target ValidationARL4C
Huge Navigator ARL4C [HugePedia]
snp3D : Map Gene to Disease10123
BioCentury BCIQARL4C
ClinGenARL4C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10123
Chemical/Pharm GKB GenePA24991
Clinical trialARL4C
Miscellaneous
canSAR (ICR)ARL4C (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL4C
EVEXARL4C
GoPubMedARL4C
iHOPARL4C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:55:26 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.