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ARL4D (ADP ribosylation factor like GTPase 4D)

Identity

Alias_namesARF4L
ADP-ribosylation factor 4-like
ADP-ribosylation factor-like 4D
Other aliasARL6
HGNC (Hugo) ARL4D
LocusID (NCBI) 379
Atlas_Id 46320
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 41476353 and ends at 41478504 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARL4D (17q21.31) / ARL4D (17q21.31)ARL4D (17q21.31) / TSN (2q14.3)TSN (2q14.3) / ARL4D (17q21.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL4D   656
Cards
Entrez_Gene (NCBI)ARL4D  379  ADP ribosylation factor like GTPase 4D
AliasesARF4L; ARL6
GeneCards (Weizmann)ARL4D
Ensembl hg19 (Hinxton)ENSG00000175906 [Gene_View]  chr17:41476353-41478504 [Contig_View]  ARL4D [Vega]
Ensembl hg38 (Hinxton)ENSG00000175906 [Gene_View]  chr17:41476353-41478504 [Contig_View]  ARL4D [Vega]
ICGC DataPortalENSG00000175906
TCGA cBioPortalARL4D
AceView (NCBI)ARL4D
Genatlas (Paris)ARL4D
WikiGenes379
SOURCE (Princeton)ARL4D
Genetics Home Reference (NIH)ARL4D
Genomic and cartography
GoldenPath hg19 (UCSC)ARL4D  -     chr17:41476353-41478504 +  17q21.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARL4D  -     17q21.31   [Description]    (hg38-Dec_2013)
EnsemblARL4D - 17q21.31 [CytoView hg19]  ARL4D - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIARL4D [Mapview hg19]  ARL4D [Mapview hg38]
OMIM600732   
Gene and transcription
Genbank (Entrez)AB060692 AK314951 BC000043 BI547763 BM682844
RefSeq transcript (Entrez)NM_001661
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)ARL4D
Cluster EST : UnigeneHs.709866 [ NCBI ]
CGAP (NCI)Hs.709866
Alternative Splicing GalleryENSG00000175906
Gene ExpressionARL4D [ NCBI-GEO ]   ARL4D [ EBI - ARRAY_EXPRESS ]   ARL4D [ SEEK ]   ARL4D [ MEM ]
Gene Expression Viewer (FireBrowse)ARL4D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)379
GTEX Portal (Tissue expression)ARL4D
Protein : pattern, domain, 3D structure
UniProt/SwissProtP49703   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP49703  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP49703
Splice isoforms : SwissVarP49703
PhosPhoSitePlusP49703
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Domain families : Smart (EMBL)ARF (SM00177)  
Conserved Domain (NCBI)ARL4D
DMDM Disease mutations379
Blocks (Seattle)ARL4D
SuperfamilyP49703
Human Protein AtlasENSG00000175906
Peptide AtlasP49703
HPRD02842
IPIIPI00027971   
Protein Interaction databases
DIP (DOE-UCLA)P49703
IntAct (EBI)P49703
FunCoupENSG00000175906
BioGRIDARL4D
STRING (EMBL)ARL4D
ZODIACARL4D
Ontologies - Pathways
QuickGOP49703
Ontology : AmiGOGTPase activity  protein binding  GTP binding  nucleolus  cytoplasm  plasma membrane  small GTPase mediated signal transduction  protein secretion  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  nucleolus  cytoplasm  plasma membrane  small GTPase mediated signal transduction  protein secretion  
NDEx NetworkARL4D
Atlas of Cancer Signalling NetworkARL4D
Wikipedia pathwaysARL4D
Orthology - Evolution
OrthoDB379
GeneTree (enSembl)ENSG00000175906
Phylogenetic Trees/Animal Genes : TreeFamARL4D
HOVERGENP49703
HOGENOMP49703
Homologs : HomoloGeneARL4D
Homology/Alignments : Family Browser (UCSC)ARL4D
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL4D [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL4D
dbVarARL4D
ClinVarARL4D
1000_GenomesARL4D 
Exome Variant ServerARL4D
ExAC (Exome Aggregation Consortium)ARL4D (select the gene name)
Genetic variants : HAPMAP379
Genomic Variants (DGV)ARL4D [DGVbeta]
DECIPHER (Syndromes)17:41476353-41478504  ENSG00000175906
CONAN: Copy Number AnalysisARL4D 
Mutations
ICGC Data PortalARL4D 
TCGA Data PortalARL4D 
Broad Tumor PortalARL4D
OASIS PortalARL4D [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL4D  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL4D
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL4D
DgiDB (Drug Gene Interaction Database)ARL4D
DoCM (Curated mutations)ARL4D (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL4D (select a term)
intoGenARL4D
Cancer3DARL4D(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600732   
Orphanet
MedgenARL4D
Genetic Testing Registry ARL4D
NextProtP49703 [Medical]
TSGene379
GENETestsARL4D
Huge Navigator ARL4D [HugePedia]
snp3D : Map Gene to Disease379
BioCentury BCIQARL4D
ClinGenARL4D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD379
Chemical/Pharm GKB GenePA24938
Clinical trialARL4D
Miscellaneous
canSAR (ICR)ARL4D (select the gene name)
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL4D
EVEXARL4D
GoPubMedARL4D
iHOPARL4D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:33 CET 2017

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