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ARL5A (ADP ribosylation factor like GTPase 5A)

Identity

Alias_namesARL5
ADP-ribosylation factor-like 5
ADP-ribosylation factor-like 5A
Other aliasARFLP5
HGNC (Hugo) ARL5A
LocusID (NCBI) 26225
Atlas_Id 54971
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 151800966 and ends at 151828495 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL5A (2q23.3) / SLC44A5 (1p31.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL5A   696
Cards
Entrez_Gene (NCBI)ARL5A  26225  ADP ribosylation factor like GTPase 5A
AliasesARFLP5; ARL5
GeneCards (Weizmann)ARL5A
Ensembl hg19 (Hinxton)ENSG00000162980 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000162980 [Gene_View]  chr2:151800966-151828495 [Contig_View]  ARL5A [Vega]
ICGC DataPortalENSG00000162980
TCGA cBioPortalARL5A
AceView (NCBI)ARL5A
Genatlas (Paris)ARL5A
WikiGenes26225
SOURCE (Princeton)ARL5A
Genetics Home Reference (NIH)ARL5A
Genomic and cartography
GoldenPath hg38 (UCSC)ARL5A  -     chr2:151800966-151828495 -  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL5A  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblARL5A - 2q23.3 [CytoView hg19]  ARL5A - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBIARL5A [Mapview hg19]  ARL5A [Mapview hg38]
OMIM608960   
Gene and transcription
Genbank (Entrez)AF087889 AF100740 AF493891 AK292714 AK298937
RefSeq transcript (Entrez)NM_001037174 NM_012097 NM_177985
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL5A
Cluster EST : UnigeneHs.470233 [ NCBI ]
CGAP (NCI)Hs.470233
Alternative Splicing GalleryENSG00000162980
Gene ExpressionARL5A [ NCBI-GEO ]   ARL5A [ EBI - ARRAY_EXPRESS ]   ARL5A [ SEEK ]   ARL5A [ MEM ]
Gene Expression Viewer (FireBrowse)ARL5A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)26225
GTEX Portal (Tissue expression)ARL5A
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y689   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y689  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y689
Splice isoforms : SwissVarQ9Y689
PhosPhoSitePlusQ9Y689
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL5A
DMDM Disease mutations26225
Blocks (Seattle)ARL5A
PDB (SRS)1Z6Y    1ZJ6    2H16    2H17   
PDB (PDBSum)1Z6Y    1ZJ6    2H16    2H17   
PDB (IMB)1Z6Y    1ZJ6    2H16    2H17   
PDB (RSDB)1Z6Y    1ZJ6    2H16    2H17   
Structural Biology KnowledgeBase1Z6Y    1ZJ6    2H16    2H17   
SCOP (Structural Classification of Proteins)1Z6Y    1ZJ6    2H16    2H17   
CATH (Classification of proteins structures)1Z6Y    1ZJ6    2H16    2H17   
SuperfamilyQ9Y689
Human Protein AtlasENSG00000162980
Peptide AtlasQ9Y689
HPRD12343
IPIIPI00412787   IPI00001923   IPI00924699   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y689
IntAct (EBI)Q9Y689
FunCoupENSG00000162980
BioGRIDARL5A
STRING (EMBL)ARL5A
ZODIACARL5A
Ontologies - Pathways
QuickGOQ9Y689
Ontology : AmiGOGTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIGTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL5A
Atlas of Cancer Signalling NetworkARL5A
Wikipedia pathwaysARL5A
Orthology - Evolution
OrthoDB26225
GeneTree (enSembl)ENSG00000162980
Phylogenetic Trees/Animal Genes : TreeFamARL5A
HOVERGENQ9Y689
HOGENOMQ9Y689
Homologs : HomoloGeneARL5A
Homology/Alignments : Family Browser (UCSC)ARL5A
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL5A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL5A
dbVarARL5A
ClinVarARL5A
1000_GenomesARL5A 
Exome Variant ServerARL5A
ExAC (Exome Aggregation Consortium)ARL5A (select the gene name)
Genetic variants : HAPMAP26225
Genomic Variants (DGV)ARL5A [DGVbeta]
DECIPHERARL5A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL5A 
Mutations
ICGC Data PortalARL5A 
TCGA Data PortalARL5A 
Broad Tumor PortalARL5A
OASIS PortalARL5A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL5A  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL5A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL5A
DgiDB (Drug Gene Interaction Database)ARL5A
DoCM (Curated mutations)ARL5A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL5A (select a term)
intoGenARL5A
Cancer3DARL5A(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608960   
Orphanet
MedgenARL5A
Genetic Testing Registry ARL5A
NextProtQ9Y689 [Medical]
TSGene26225
GENETestsARL5A
Huge Navigator ARL5A [HugePedia]
snp3D : Map Gene to Disease26225
BioCentury BCIQARL5A
ClinGenARL5A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26225
Chemical/Pharm GKB GenePA24989
Clinical trialARL5A
Miscellaneous
canSAR (ICR)ARL5A (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL5A
EVEXARL5A
GoPubMedARL5A
iHOPARL5A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:44 CEST 2017

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