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ARL5B (ADP ribosylation factor like GTPase 5B)

Identity

Alias (NCBI)ARL8
HGNC (Hugo) ARL5B
HGNC Previous nameARL8
HGNC Previous nameADP-ribosylation factor-like 8
 ADP-ribosylation factor-like 5B
LocusID (NCBI) 221079
Atlas_Id 60500
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 18659431 and ends at 18681639 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
APTX (9p21.1) / ARL5B (10p12.31)ARL5B (10p12.31) / CCDC102B (18q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARL5B   23052
Cards
Entrez_Gene (NCBI)ARL5B    ADP ribosylation factor like GTPase 5B
AliasesARL8
GeneCards (Weizmann)ARL5B
Ensembl hg19 (Hinxton)ENSG00000165997 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000165997 [Gene_View]  ENSG00000165997 [Sequence]  chr10:18659431-18681639 [Contig_View]  ARL5B [Vega]
ICGC DataPortalENSG00000165997
TCGA cBioPortalARL5B
AceView (NCBI)ARL5B
Genatlas (Paris)ARL5B
SOURCE (Princeton)ARL5B
Genetics Home Reference (NIH)ARL5B
Genomic and cartography
GoldenPath hg38 (UCSC)ARL5B  -     chr10:18659431-18681639 +  10p12.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL5B  -     10p12.31   [Description]    (hg19-Feb_2009)
GoldenPathARL5B - 10p12.31 [CytoView hg19]  ARL5B - 10p12.31 [CytoView hg38]
ImmunoBaseENSG00000165997
Genome Data Viewer NCBIARL5B [Mapview hg19]  
OMIM608909   
Gene and transcription
Genbank (Entrez)AF494061 AK022915 AK027275 AL133611 AL700452
RefSeq transcript (Entrez)NM_178815
Consensus coding sequences : CCDS (NCBI)ARL5B
Gene ExpressionARL5B [ NCBI-GEO ]   ARL5B [ EBI - ARRAY_EXPRESS ]   ARL5B [ SEEK ]   ARL5B [ MEM ]
Gene Expression Viewer (FireBrowse)ARL5B [ Firebrowse - Broad ]
GenevisibleExpression of ARL5B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221079
GTEX Portal (Tissue expression)ARL5B
Human Protein AtlasENSG00000165997-ARL5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KC2
PhosPhoSitePlusQ96KC2
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL5B
PDB (RSDB)1YZG   
PDB Europe1YZG   
PDB (PDBSum)1YZG   
PDB (IMB)1YZG   
Structural Biology KnowledgeBase1YZG   
SCOP (Structural Classification of Proteins)1YZG   
CATH (Classification of proteins structures)1YZG   
SuperfamilyQ96KC2
AlphaFold pdb e-kbQ96KC2   
Human Protein Atlas [tissue]ENSG00000165997-ARL5B [tissue]
HPRD12328
Protein Interaction databases
DIP (DOE-UCLA)Q96KC2
IntAct (EBI)Q96KC2
BioGRIDARL5B
STRING (EMBL)ARL5B
ZODIACARL5B
Ontologies - Pathways
QuickGOQ96KC2
Ontology : AmiGOGTPase activity  protein binding  GTP binding  cytoplasm  trans-Golgi network  intracellular protein transport  vesicle-mediated transport  protein localization to Golgi membrane  protein localization to Golgi membrane  
Ontology : EGO-EBIGTPase activity  protein binding  GTP binding  cytoplasm  trans-Golgi network  intracellular protein transport  vesicle-mediated transport  protein localization to Golgi membrane  protein localization to Golgi membrane  
NDEx NetworkARL5B
Atlas of Cancer Signalling NetworkARL5B
Wikipedia pathwaysARL5B
Orthology - Evolution
OrthoDB221079
GeneTree (enSembl)ENSG00000165997
Phylogenetic Trees/Animal Genes : TreeFamARL5B
Homologs : HomoloGeneARL5B
Homology/Alignments : Family Browser (UCSC)ARL5B
Gene fusions - Rearrangements
Fusion : QuiverARL5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL5B
dbVarARL5B
ClinVarARL5B
MonarchARL5B
1000_GenomesARL5B 
Exome Variant ServerARL5B
GNOMAD BrowserENSG00000165997
Varsome BrowserARL5B
ACMGARL5B variants
VarityQ96KC2
Genomic Variants (DGV)ARL5B [DGVbeta]
DECIPHERARL5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL5B 
Mutations
ICGC Data PortalARL5B 
TCGA Data PortalARL5B 
Broad Tumor PortalARL5B
OASIS PortalARL5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL5B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARL5B
Mutations and Diseases : HGMDARL5B
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARL5B
DgiDB (Drug Gene Interaction Database)ARL5B
DoCM (Curated mutations)ARL5B
CIViC (Clinical Interpretations of Variants in Cancer)ARL5B
Cancer3DARL5B
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608909   
Orphanet
DisGeNETARL5B
MedgenARL5B
Genetic Testing Registry ARL5B
NextProtQ96KC2 [Medical]
GENETestsARL5B
Target ValidationARL5B
Huge Navigator ARL5B [HugePedia]
ClinGenARL5B
Clinical trials, drugs, therapy
MyCancerGenomeARL5B
Protein Interactions : CTDARL5B
Pharm GKB GenePA134979161
PharosQ96KC2
Clinical trialARL5B
Miscellaneous
canSAR (ICR)ARL5B
HarmonizomeARL5B
DataMed IndexARL5B
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARL5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:42:34 CEST 2021

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