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ARL5B (ADP-ribosylation factor-like 5B)

Identity

Alias_namesARL8
ADP-ribosylation factor-like 8
ADP-ribosylation factor-like 5B
Other alias
HGNC (Hugo) ARL5B
LocusID (NCBI) 221079
Atlas_Id 60500
Location 10p12.31  [Link to chromosome band 10p12]
Location_base_pair Starts at 18948313 and ends at 18966940 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
APTX (9p21.1) / ARL5B (10p12.31)ARL5B (10p12.31) / CCDC102B (18q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL5B   23052
Cards
Entrez_Gene (NCBI)ARL5B  221079  ADP-ribosylation factor-like 5B
AliasesARL8
GeneCards (Weizmann)ARL5B
Ensembl hg19 (Hinxton)ENSG00000165997 [Gene_View]  chr10:18948313-18966940 [Contig_View]  ARL5B [Vega]
Ensembl hg38 (Hinxton)ENSG00000165997 [Gene_View]  chr10:18948313-18966940 [Contig_View]  ARL5B [Vega]
ICGC DataPortalENSG00000165997
TCGA cBioPortalARL5B
AceView (NCBI)ARL5B
Genatlas (Paris)ARL5B
WikiGenes221079
SOURCE (Princeton)ARL5B
Genetics Home Reference (NIH)ARL5B
Genomic and cartography
GoldenPath hg19 (UCSC)ARL5B  -     chr10:18948313-18966940 +  10p12.31   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARL5B  -     10p12.31   [Description]    (hg38-Dec_2013)
EnsemblARL5B - 10p12.31 [CytoView hg19]  ARL5B - 10p12.31 [CytoView hg38]
Mapping of homologs : NCBIARL5B [Mapview hg19]  ARL5B [Mapview hg38]
OMIM608909   
Gene and transcription
Genbank (Entrez)AF494061 AK022915 AK027275 AL133611 AL700452
RefSeq transcript (Entrez)NM_178815
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)ARL5B
Cluster EST : UnigeneHs.594569 [ NCBI ]
CGAP (NCI)Hs.594569
Alternative Splicing GalleryENSG00000165997
Gene ExpressionARL5B [ NCBI-GEO ]   ARL5B [ EBI - ARRAY_EXPRESS ]   ARL5B [ SEEK ]   ARL5B [ MEM ]
Gene Expression Viewer (FireBrowse)ARL5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221079
GTEX Portal (Tissue expression)ARL5B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96KC2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96KC2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96KC2
Splice isoforms : SwissVarQ96KC2
PhosPhoSitePlusQ96KC2
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Domain families : Smart (EMBL)ARF (SM00177)  
Conserved Domain (NCBI)ARL5B
DMDM Disease mutations221079
Blocks (Seattle)ARL5B
PDB (SRS)1YZG   
PDB (PDBSum)1YZG   
PDB (IMB)1YZG   
PDB (RSDB)1YZG   
Structural Biology KnowledgeBase1YZG   
SCOP (Structural Classification of Proteins)1YZG   
CATH (Classification of proteins structures)1YZG   
SuperfamilyQ96KC2
Human Protein AtlasENSG00000165997
Peptide AtlasQ96KC2
HPRD12328
IPIIPI00102036   
Protein Interaction databases
DIP (DOE-UCLA)Q96KC2
IntAct (EBI)Q96KC2
FunCoupENSG00000165997
BioGRIDARL5B
STRING (EMBL)ARL5B
ZODIACARL5B
Ontologies - Pathways
QuickGOQ96KC2
Ontology : AmiGOGTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIGTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL5B
Atlas of Cancer Signalling NetworkARL5B
Wikipedia pathwaysARL5B
Orthology - Evolution
OrthoDB221079
GeneTree (enSembl)ENSG00000165997
Phylogenetic Trees/Animal Genes : TreeFamARL5B
HOVERGENQ96KC2
HOGENOMQ96KC2
Homologs : HomoloGeneARL5B
Homology/Alignments : Family Browser (UCSC)ARL5B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL5B
dbVarARL5B
ClinVarARL5B
1000_GenomesARL5B 
Exome Variant ServerARL5B
ExAC (Exome Aggregation Consortium)ARL5B (select the gene name)
Genetic variants : HAPMAP221079
Genomic Variants (DGV)ARL5B [DGVbeta]
DECIPHER (Syndromes)10:18948313-18966940  ENSG00000165997
CONAN: Copy Number AnalysisARL5B 
Mutations
ICGC Data PortalARL5B 
TCGA Data PortalARL5B 
Broad Tumor PortalARL5B
OASIS PortalARL5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL5B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL5B
DgiDB (Drug Gene Interaction Database)ARL5B
DoCM (Curated mutations)ARL5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL5B (select a term)
intoGenARL5B
Cancer3DARL5B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608909   
Orphanet
MedgenARL5B
Genetic Testing Registry ARL5B
NextProtQ96KC2 [Medical]
TSGene221079
GENETestsARL5B
Huge Navigator ARL5B [HugePedia]
snp3D : Map Gene to Disease221079
BioCentury BCIQARL5B
ClinGenARL5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221079
Chemical/Pharm GKB GenePA134979161
Clinical trialARL5B
Miscellaneous
canSAR (ICR)ARL5B (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL5B
EVEXARL5B
GoPubMedARL5B
iHOPARL5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:54:58 CET 2017

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