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ARL5C (ADP ribosylation factor like GTPase 5C)

Identity

Alias_namesARL12
ADP-ribosylation factor-like 12
ADP-ribosylation factor-like 5C
Other alias
HGNC (Hugo) ARL5C
LocusID (NCBI) 390790
Atlas_Id 60501
Location 17q12  [Link to chromosome band 17q12]
Location_base_pair Starts at 39156894 and ends at 39166161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
COL11A1 (1p21.1) / ARL5C (17q12)SPOP (17q21.33) / ARL5C (17q12)SPOP ARL5C
COL11A1 ARL5C

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL5C   31111
Cards
Entrez_Gene (NCBI)ARL5C  390790  ADP ribosylation factor like GTPase 5C
AliasesARL12
GeneCards (Weizmann)ARL5C
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:39156894-39166161 [Contig_View]  ARL5C [Vega]
TCGA cBioPortalARL5C
AceView (NCBI)ARL5C
Genatlas (Paris)ARL5C
WikiGenes390790
SOURCE (Princeton)ARL5C
Genetics Home Reference (NIH)ARL5C
Genomic and cartography
GoldenPath hg38 (UCSC)ARL5C  -     chr17:39156894-39166161 -  17q12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL5C  -     17q12   [Description]    (hg19-Feb_2009)
EnsemblARL5C - 17q12 [CytoView hg19]  ARL5C - 17q12 [CytoView hg38]
Mapping of homologs : NCBIARL5C [Mapview hg19]  ARL5C [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK310706
RefSeq transcript (Entrez)NM_001143968
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL5C
Cluster EST : UnigeneHs.568007 [ NCBI ]
CGAP (NCI)Hs.568007
Gene ExpressionARL5C [ NCBI-GEO ]   ARL5C [ EBI - ARRAY_EXPRESS ]   ARL5C [ SEEK ]   ARL5C [ MEM ]
Gene Expression Viewer (FireBrowse)ARL5C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)390790
GTEX Portal (Tissue expression)ARL5C
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NH57   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NH57  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NH57
Splice isoforms : SwissVarA6NH57
PhosPhoSitePlusA6NH57
Domaine pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (EBI)P-loop_NTPase    Small_GTP-bd_dom    Small_GTPase_ARF    Small_GTPase_ARF/SAR   
Domain families : Pfam (Sanger)Arf (PF00025)   
Domain families : Pfam (NCBI)pfam00025   
Conserved Domain (NCBI)ARL5C
DMDM Disease mutations390790
Blocks (Seattle)ARL5C
SuperfamilyA6NH57
Peptide AtlasA6NH57
IPIIPI00376097   
Protein Interaction databases
DIP (DOE-UCLA)A6NH57
IntAct (EBI)A6NH57
BioGRIDARL5C
STRING (EMBL)ARL5C
ZODIACARL5C
Ontologies - Pathways
QuickGOA6NH57
Ontology : AmiGOGTP binding  intracellular  small GTPase mediated signal transduction  
Ontology : EGO-EBIGTP binding  intracellular  small GTPase mediated signal transduction  
NDEx NetworkARL5C
Atlas of Cancer Signalling NetworkARL5C
Wikipedia pathwaysARL5C
Orthology - Evolution
OrthoDB390790
Phylogenetic Trees/Animal Genes : TreeFamARL5C
HOVERGENA6NH57
HOGENOMA6NH57
Homologs : HomoloGeneARL5C
Homology/Alignments : Family Browser (UCSC)ARL5C
Gene fusions - Rearrangements
Fusion: TCGASPOP ARL5C
Fusion: TCGACOL11A1 ARL5C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL5C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL5C
dbVarARL5C
ClinVarARL5C
1000_GenomesARL5C 
Exome Variant ServerARL5C
ExAC (Exome Aggregation Consortium)ARL5C (select the gene name)
Genetic variants : HAPMAP390790
Genomic Variants (DGV)ARL5C [DGVbeta]
DECIPHERARL5C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL5C 
Mutations
ICGC Data PortalARL5C 
TCGA Data PortalARL5C 
Broad Tumor PortalARL5C
OASIS PortalARL5C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL5C  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL5C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL5C
DgiDB (Drug Gene Interaction Database)ARL5C
DoCM (Curated mutations)ARL5C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL5C (select a term)
intoGenARL5C
Cancer3DARL5C(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARL5C
Genetic Testing Registry ARL5C
NextProtA6NH57 [Medical]
TSGene390790
GENETestsARL5C
Target ValidationARL5C
Huge Navigator ARL5C [HugePedia]
snp3D : Map Gene to Disease390790
BioCentury BCIQARL5C
ClinGenARL5C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD390790
Chemical/Pharm GKB GenePA134964408
Clinical trialARL5C
Miscellaneous
canSAR (ICR)ARL5C (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL5C
EVEXARL5C
GoPubMedARL5C
iHOPARL5C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Aug 1 16:09:37 CEST 2017

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