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ARL6IP4 (ADP ribosylation factor like GTPase 6 interacting protein 4)

Identity

Alias_namesADP-ribosylation-like factor 6 interacting protein 4
ADP-ribosylation factor-like 6 interacting protein 4
Alias_symbol (synonym)SR-25
SRp25
SFRS20
SRrp37
Other alias
HGNC (Hugo) ARL6IP4
LocusID (NCBI) 51329
Atlas_Id 60502
Location 12q24.31  [Link to chromosome band 12q24]
Location_base_pair Starts at 122980060 and ends at 122982913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL6IP4 (12q24.31) / LIG1 (19q13.33)EGR1 (5q31.2) / ARL6IP4 (12q24.31)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL6IP4   18076
Cards
Entrez_Gene (NCBI)ARL6IP4  51329  ADP ribosylation factor like GTPase 6 interacting protein 4
AliasesSFRS20; SR-25; SRp25; SRrp37
GeneCards (Weizmann)ARL6IP4
Ensembl hg19 (Hinxton)ENSG00000182196 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182196 [Gene_View]  chr12:122980060-122982913 [Contig_View]  ARL6IP4 [Vega]
ICGC DataPortalENSG00000182196
TCGA cBioPortalARL6IP4
AceView (NCBI)ARL6IP4
Genatlas (Paris)ARL6IP4
WikiGenes51329
SOURCE (Princeton)ARL6IP4
Genetics Home Reference (NIH)ARL6IP4
Genomic and cartography
GoldenPath hg38 (UCSC)ARL6IP4  -     chr12:122980060-122982913 +  12q24.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL6IP4  -     12q24.31   [Description]    (hg19-Feb_2009)
EnsemblARL6IP4 - 12q24.31 [CytoView hg19]  ARL6IP4 - 12q24.31 [CytoView hg38]
Mapping of homologs : NCBIARL6IP4 [Mapview hg19]  ARL6IP4 [Mapview hg38]
OMIM607668   
Gene and transcription
Genbank (Entrez)AA887283 AB035384 AF267748 AK027285 AK315759
RefSeq transcript (Entrez)NM_001002251 NM_001002252 NM_001278378 NM_001278379 NM_001278380 NM_016638 NM_018694
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL6IP4
Cluster EST : UnigeneHs.103561 [ NCBI ]
CGAP (NCI)Hs.103561
Alternative Splicing GalleryENSG00000182196
Gene ExpressionARL6IP4 [ NCBI-GEO ]   ARL6IP4 [ EBI - ARRAY_EXPRESS ]   ARL6IP4 [ SEEK ]   ARL6IP4 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL6IP4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51329
GTEX Portal (Tissue expression)ARL6IP4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ66PJ3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ66PJ3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ66PJ3
Splice isoforms : SwissVarQ66PJ3
PhosPhoSitePlusQ66PJ3
Domains : Interpro (EBI)Nucl_RNA-splicing_assoc_SR-25   
Domain families : Pfam (Sanger)SR-25 (PF10500)   
Domain families : Pfam (NCBI)pfam10500   
Conserved Domain (NCBI)ARL6IP4
DMDM Disease mutations51329
Blocks (Seattle)ARL6IP4
SuperfamilyQ66PJ3
Human Protein AtlasENSG00000182196
Peptide AtlasQ66PJ3
HPRD09640
IPIIPI00434965   IPI00877018   IPI00434966   IPI00877082   IPI00877064   IPI00883925   IPI00796038   IPI01018703   IPI01014776   IPI01013635   IPI00010276   IPI01013603   IPI00942578   IPI00792543   IPI00939585   
Protein Interaction databases
DIP (DOE-UCLA)Q66PJ3
IntAct (EBI)Q66PJ3
FunCoupENSG00000182196
BioGRIDARL6IP4
STRING (EMBL)ARL6IP4
ZODIACARL6IP4
Ontologies - Pathways
QuickGOQ66PJ3
Ontology : AmiGORNA binding  protein binding  nucleus  nucleolus  mRNA processing  RNA splicing  nuclear speck  
Ontology : EGO-EBIRNA binding  protein binding  nucleus  nucleolus  mRNA processing  RNA splicing  nuclear speck  
NDEx NetworkARL6IP4
Atlas of Cancer Signalling NetworkARL6IP4
Wikipedia pathwaysARL6IP4
Orthology - Evolution
OrthoDB51329
GeneTree (enSembl)ENSG00000182196
Phylogenetic Trees/Animal Genes : TreeFamARL6IP4
HOVERGENQ66PJ3
HOGENOMQ66PJ3
Homologs : HomoloGeneARL6IP4
Homology/Alignments : Family Browser (UCSC)ARL6IP4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL6IP4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL6IP4
dbVarARL6IP4
ClinVarARL6IP4
1000_GenomesARL6IP4 
Exome Variant ServerARL6IP4
ExAC (Exome Aggregation Consortium)ARL6IP4 (select the gene name)
Genetic variants : HAPMAP51329
Genomic Variants (DGV)ARL6IP4 [DGVbeta]
DECIPHERARL6IP4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL6IP4 
Mutations
ICGC Data PortalARL6IP4 
TCGA Data PortalARL6IP4 
Broad Tumor PortalARL6IP4
OASIS PortalARL6IP4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL6IP4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL6IP4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL6IP4
DgiDB (Drug Gene Interaction Database)ARL6IP4
DoCM (Curated mutations)ARL6IP4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL6IP4 (select a term)
intoGenARL6IP4
Cancer3DARL6IP4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607668   
Orphanet
MedgenARL6IP4
Genetic Testing Registry ARL6IP4
NextProtQ66PJ3 [Medical]
TSGene51329
GENETestsARL6IP4
Target ValidationARL6IP4
Huge Navigator ARL6IP4 [HugePedia]
snp3D : Map Gene to Disease51329
BioCentury BCIQARL6IP4
ClinGenARL6IP4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51329
Chemical/Pharm GKB GenePA134879338
Clinical trialARL6IP4
Miscellaneous
canSAR (ICR)ARL6IP4 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL6IP4
EVEXARL6IP4
GoPubMedARL6IP4
iHOPARL6IP4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:45 CEST 2017

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