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ARL6IP5 (ADP-ribosylation factor-like 6 interacting protein 5)

Identity

Other namesDERP11
GTRAP3-18
JWA
PRAF3
addicsin
hp22
jmx
HGNC (Hugo) ARL6IP5
LocusID (NCBI) 10550
Location 3p14.1
Location_base_pair Starts at 69134090 and ends at 69155239 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARL6IP5   16937
Cards
Entrez_Gene (NCBI)ARL6IP5  10550  ADP-ribosylation factor-like 6 interacting protein 5
GeneCards (Weizmann)ARL6IP5
Ensembl (Hinxton)ENSG00000144746 [Gene_View]  chr3:69134090-69155239 [Contig_View]  ARL6IP5 [Vega]
ICGC DataPortalENSG00000144746
cBioPortalARL6IP5
AceView (NCBI)ARL6IP5
Genatlas (Paris)ARL6IP5
WikiGenes10550
SOURCE (Princeton)NM_006407
Genomic and cartography
GoldenPath (UCSC)ARL6IP5  -  3p14.1   chr3:69134090-69155239 +  3p14.1   [Description]    (hg19-Feb_2009)
EnsemblARL6IP5 - 3p14.1 [CytoView]
Mapping of homologs : NCBIARL6IP5 [Mapview]
OMIM605709   
Gene and transcription
Genbank (Entrez)AB014765 AB052638 AB097051 AF070523 AF115965
RefSeq transcript (Entrez)NM_006407
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838878 NW_004929310
Consensus coding sequences : CCDS (NCBI)ARL6IP5
Cluster EST : UnigeneHs.745255 [ NCBI ]
CGAP (NCI)Hs.745255
Alternative Splicing : Fast-db (Paris)GSHG0020921
Alternative Splicing GalleryENSG00000144746
Gene ExpressionARL6IP5 [ NCBI-GEO ]     ARL6IP5 [ SEEK ]   ARL6IP5 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75915 (Uniprot)
NextProtO75915  [Medical]
With graphics : InterProO75915
Splice isoforms : SwissVarO75915 (Swissvar)
Domains : Interpro (EBI)Prenylated_rab_accept_PRA1 [organisation]  
Related proteins : CluSTrO75915
Domain families : Pfam (Sanger)PRA1 (PF03208)   
Domain families : Pfam (NCBI)pfam03208   
DMDM Disease mutations10550
Blocks (Seattle)O75915
Human Protein AtlasENSG00000144746 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasO75915
HPRD09303
IPIIPI00007426   IPI00908696   IPI00946721   IPI00945943   
Protein Interaction databases
DIP (DOE-UCLA)O75915
IntAct (EBI)O75915
FunCoupENSG00000144746
BioGRIDARL6IP5
InParanoidO75915
Interologous Interaction database O75915
IntegromeDBARL6IP5
STRING (EMBL)ARL6IP5
Ontologies - Pathways
Ontology : AmiGOmolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  protein C-terminus binding  intrinsic apoptotic signaling pathway in response to oxidative stress  negative regulation of mitochondrial membrane potential  L-glutamate transport  membrane  integral component of membrane  positive regulation of stress-activated MAPK cascade  positive regulation of apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of transport  extracellular vesicular exosome  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  protein C-terminus binding  intrinsic apoptotic signaling pathway in response to oxidative stress  negative regulation of mitochondrial membrane potential  L-glutamate transport  membrane  integral component of membrane  positive regulation of stress-activated MAPK cascade  positive regulation of apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of transport  extracellular vesicular exosome  
Protein Interaction DatabaseARL6IP5
Wikipedia pathwaysARL6IP5
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARL6IP5
snp3D : Map Gene to Disease10550
SNP (GeneSNP Utah)ARL6IP5
SNP : HGBaseARL6IP5
Genetic variants : HAPMAPARL6IP5
Exome VariantARL6IP5
1000_GenomesARL6IP5 
ICGC programENSG00000144746 
Somatic Mutations in Cancer : COSMICARL6IP5 
CONAN: Copy Number AnalysisARL6IP5 
Mutations and Diseases : HGMDARL6IP5
Genomic VariantsARL6IP5  ARL6IP5 [DGVbeta]
dbVarARL6IP5
ClinVarARL6IP5
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605709   
MedgenARL6IP5
GENETestsARL6IP5
Disease Genetic AssociationARL6IP5
Huge Navigator ARL6IP5 [HugePedia]  ARL6IP5 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneARL6IP5
Homology/Alignments : Family Browser (UCSC)ARL6IP5
Phylogenetic Trees/Animal Genes : TreeFamARL6IP5
Chemical/Protein Interactions : CTD10550
Chemical/Pharm GKB GenePA134898937
Clinical trialARL6IP5
Cancer Resource (Charite)ENSG00000144746
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
CoreMineARL6IP5
iHOPARL6IP5
OncoSearchARL6IP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jul 30 13:43:40 CEST 2014

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