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Taking over the Atlas
Dear Colleagues,
The Atlas, once more, is in great danger, and I will have to proceed to a collective economic lay-off of all the team involved in the Atlas before the begining of April 2015 (a foundation having suddenly withdrawn its commitment to support the Atlas). I ask you herein if any Scientific Society (a Society of Cytogenetics, of Clinical Genetics, of Hematology, or a Cancer Society, or any other...), any University and/or Hospital, any Charity, or any database would be interested in taking over the Atlas, in whole or in part. If taking charge of the whole lot is too big, a consortium of various actors could be the solution (I am myself trying to find partners). Could you please spread the information, contact the relevant authorities, and find partners.
Survival of the Atlas will be critically dependant upon your ability to find solutions (and urgently!).
Kind regards.
Jean-Loup Huret
Donations are also welcome

Donate (in Euros)

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ARL6IP5 (ADP-ribosylation factor-like 6 interacting protein 5)

Identity

Other namesDERP11
GTRAP3-18
JWA
PRAF3
addicsin
hp22
jmx
HGNC (Hugo) ARL6IP5
LocusID (NCBI) 10550
Location 3p14.1
Location_base_pair Starts at 69134090 and ends at 69155239 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARL6IP5   16937
Cards
Entrez_Gene (NCBI)ARL6IP5  10550  ADP-ribosylation factor-like 6 interacting protein 5
GeneCards (Weizmann)ARL6IP5
Ensembl hg19 (Hinxton)ENSG00000144746 [Gene_View]  chr3:69134090-69155239 [Contig_View]  ARL6IP5 [Vega]
Ensembl hg38 (Hinxton)ENSG00000144746 [Gene_View]  chr3:69134090-69155239 [Contig_View]  ARL6IP5 [Vega]
ICGC DataPortalENSG00000144746
cBioPortalARL6IP5
AceView (NCBI)ARL6IP5
Genatlas (Paris)ARL6IP5
WikiGenes10550
SOURCE (Princeton)ARL6IP5
Genomic and cartography
GoldenPath hg19 (UCSC)ARL6IP5  -     chr3:69134090-69155239 +  3p14.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARL6IP5  -     3p14.1   [Description]    (hg38-Dec_2013)
EnsemblARL6IP5 - 3p14.1 [CytoView hg19]  ARL6IP5 - 3p14.1 [CytoView hg38]
Mapping of homologs : NCBIARL6IP5 [Mapview hg19]  ARL6IP5 [Mapview hg38]
OMIM605709   
Gene and transcription
Genbank (Entrez)AB014765 AB052638 AB097051 AF070523 AF115965
RefSeq transcript (Entrez)NM_006407
RefSeq genomic (Entrez)AC_000135 NC_000003 NC_018914 NT_022517 NW_001838878 NW_004929310
Consensus coding sequences : CCDS (NCBI)ARL6IP5
Cluster EST : UnigeneHs.745255 [ NCBI ]
CGAP (NCI)Hs.745255
Alternative Splicing : Fast-db (Paris)GSHG0020921
Alternative Splicing GalleryENSG00000144746
Gene ExpressionARL6IP5 [ NCBI-GEO ]     ARL6IP5 [ SEEK ]   ARL6IP5 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75915 (Uniprot)
NextProtO75915  [Medical]
With graphics : InterProO75915
Splice isoforms : SwissVarO75915 (Swissvar)
Domains : Interpro (EBI)Prenylated_rab_accept_PRA1   
Related proteins : CluSTrO75915
Domain families : Pfam (Sanger)PRA1 (PF03208)   
Domain families : Pfam (NCBI)pfam03208   
DMDM Disease mutations10550
Blocks (Seattle)O75915
Human Protein AtlasENSG00000144746
Peptide AtlasO75915
HPRD09303
IPIIPI00007426   IPI00908696   IPI00946721   IPI00945943   
Protein Interaction databases
DIP (DOE-UCLA)O75915
IntAct (EBI)O75915
FunCoupENSG00000144746
BioGRIDARL6IP5
IntegromeDBARL6IP5
STRING (EMBL)ARL6IP5
Ontologies - Pathways
QuickGOO75915
Ontology : AmiGOmolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  protein C-terminus binding  intrinsic apoptotic signaling pathway in response to oxidative stress  negative regulation of mitochondrial membrane potential  L-glutamate transport  membrane  integral component of membrane  positive regulation of stress-activated MAPK cascade  positive regulation of apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of transport  extracellular vesicular exosome  
Ontology : EGO-EBImolecular_function  endoplasmic reticulum  endoplasmic reticulum membrane  protein C-terminus binding  intrinsic apoptotic signaling pathway in response to oxidative stress  negative regulation of mitochondrial membrane potential  L-glutamate transport  membrane  integral component of membrane  positive regulation of stress-activated MAPK cascade  positive regulation of apoptotic process  positive regulation of cysteine-type endopeptidase activity involved in apoptotic process  negative regulation of transport  extracellular vesicular exosome  
Protein Interaction DatabaseARL6IP5
DoCM (Curated mutations)ARL6IP5
Wikipedia pathwaysARL6IP5
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerARL6IP5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL6IP5
dbVarARL6IP5
ClinVarARL6IP5
1000_GenomesARL6IP5 
Exome Variant ServerARL6IP5
SNP (GeneSNP Utah)ARL6IP5
SNP : HGBaseARL6IP5
Genetic variants : HAPMAPARL6IP5
Genomic Variants (DGV)ARL6IP5 [DGVbeta]
Mutations
ICGC Data PortalENSG00000144746 
Somatic Mutations in Cancer : COSMICARL6IP5 
CONAN: Copy Number AnalysisARL6IP5 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)3:69134090-69155239
Mutations and Diseases : HGMDARL6IP5
OMIM605709   
MedgenARL6IP5
NextProtO75915 [Medical]
GENETestsARL6IP5
Disease Genetic AssociationARL6IP5
Huge Navigator ARL6IP5 [HugePedia]  ARL6IP5 [HugeCancerGEM]
snp3D : Map Gene to Disease10550
DGIdb (Drug Gene Interaction db)ARL6IP5
General knowledge
Homologs : HomoloGeneARL6IP5
Homology/Alignments : Family Browser (UCSC)ARL6IP5
Phylogenetic Trees/Animal Genes : TreeFamARL6IP5
Chemical/Protein Interactions : CTD10550
Chemical/Pharm GKB GenePA134898937
Clinical trialARL6IP5
Cancer Resource (Charite)ENSG00000144746
Other databases
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
CoreMineARL6IP5
GoPubMedARL6IP5
iHOPARL6IP5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 14 14:42:57 CET 2015

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jlhuret@AtlasGeneticsOncology.org.