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ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6)

Identity

Alias_namesADP-ribosylation factor-like 6 interacting protein 6
Alias_symbol (synonym)MGC33864
Other aliasAIP-6
AIP6
PFAAP1
HGNC (Hugo) ARL6IP6
LocusID (NCBI) 151188
Atlas_Id 60503
Location 2q23.3  [Link to chromosome band 2q23]
Location_base_pair Starts at 152718637 and ends at 152761253 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARL6IP6 (2q23.3) / PKN1 (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARL6IP6   24048
Cards
Entrez_Gene (NCBI)ARL6IP6  151188  ADP ribosylation factor like GTPase 6 interacting protein 6
AliasesAIP-6; AIP6; PFAAP1
GeneCards (Weizmann)ARL6IP6
Ensembl hg19 (Hinxton)ENSG00000177917 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000177917 [Gene_View]  chr2:152718637-152761253 [Contig_View]  ARL6IP6 [Vega]
ICGC DataPortalENSG00000177917
TCGA cBioPortalARL6IP6
AceView (NCBI)ARL6IP6
Genatlas (Paris)ARL6IP6
WikiGenes151188
SOURCE (Princeton)ARL6IP6
Genetics Home Reference (NIH)ARL6IP6
Genomic and cartography
GoldenPath hg38 (UCSC)ARL6IP6  -     chr2:152718637-152761253 +  2q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARL6IP6  -     2q23.3   [Description]    (hg19-Feb_2009)
EnsemblARL6IP6 - 2q23.3 [CytoView hg19]  ARL6IP6 - 2q23.3 [CytoView hg38]
Mapping of homologs : NCBIARL6IP6 [Mapview hg19]  ARL6IP6 [Mapview hg38]
OMIM616495   
Gene and transcription
Genbank (Entrez)AA654338 AF530059 AK023109 AK094696 AK315657
RefSeq transcript (Entrez)NM_001350068 NM_152522
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARL6IP6
Cluster EST : UnigeneHs.744874 [ NCBI ]
CGAP (NCI)Hs.744874
Alternative Splicing GalleryENSG00000177917
Gene ExpressionARL6IP6 [ NCBI-GEO ]   ARL6IP6 [ EBI - ARRAY_EXPRESS ]   ARL6IP6 [ SEEK ]   ARL6IP6 [ MEM ]
Gene Expression Viewer (FireBrowse)ARL6IP6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)151188
GTEX Portal (Tissue expression)ARL6IP6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6S5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6S5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6S5
Splice isoforms : SwissVarQ8N6S5
PhosPhoSitePlusQ8N6S5
Domains : Interpro (EBI)ARL6IP6   
Domain families : Pfam (Sanger)ARL6IP6 (PF15062)   
Domain families : Pfam (NCBI)pfam15062   
Conserved Domain (NCBI)ARL6IP6
DMDM Disease mutations151188
Blocks (Seattle)ARL6IP6
SuperfamilyQ8N6S5
Human Protein AtlasENSG00000177917
Peptide AtlasQ8N6S5
HPRD12485
IPIIPI00167074   IPI00917339   IPI00916295   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6S5
IntAct (EBI)Q8N6S5
FunCoupENSG00000177917
BioGRIDARL6IP6
STRING (EMBL)ARL6IP6
ZODIACARL6IP6
Ontologies - Pathways
QuickGOQ8N6S5
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkARL6IP6
Atlas of Cancer Signalling NetworkARL6IP6
Wikipedia pathwaysARL6IP6
Orthology - Evolution
OrthoDB151188
GeneTree (enSembl)ENSG00000177917
Phylogenetic Trees/Animal Genes : TreeFamARL6IP6
HOVERGENQ8N6S5
HOGENOMQ8N6S5
Homologs : HomoloGeneARL6IP6
Homology/Alignments : Family Browser (UCSC)ARL6IP6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARL6IP6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARL6IP6
dbVarARL6IP6
ClinVarARL6IP6
1000_GenomesARL6IP6 
Exome Variant ServerARL6IP6
ExAC (Exome Aggregation Consortium)ARL6IP6 (select the gene name)
Genetic variants : HAPMAP151188
Genomic Variants (DGV)ARL6IP6 [DGVbeta]
DECIPHERARL6IP6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARL6IP6 
Mutations
ICGC Data PortalARL6IP6 
TCGA Data PortalARL6IP6 
Broad Tumor PortalARL6IP6
OASIS PortalARL6IP6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARL6IP6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARL6IP6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARL6IP6
DgiDB (Drug Gene Interaction Database)ARL6IP6
DoCM (Curated mutations)ARL6IP6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARL6IP6 (select a term)
intoGenARL6IP6
Cancer3DARL6IP6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616495   
Orphanet
MedgenARL6IP6
Genetic Testing Registry ARL6IP6
NextProtQ8N6S5 [Medical]
TSGene151188
GENETestsARL6IP6
Target ValidationARL6IP6
Huge Navigator ARL6IP6 [HugePedia]
snp3D : Map Gene to Disease151188
BioCentury BCIQARL6IP6
ClinGenARL6IP6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD151188
Chemical/Pharm GKB GenePA134866669
Clinical trialARL6IP6
Miscellaneous
canSAR (ICR)ARL6IP6 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARL6IP6
EVEXARL6IP6
GoPubMedARL6IP6
iHOPARL6IP6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:46 CEST 2017

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