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ARMC1 (armadillo repeat containing 1)

Identity

Alias_symbol (synonym)FLJ10511
Arcp
Other alias
HGNC (Hugo) ARMC1
LocusID (NCBI) 55156
Atlas_Id 60507
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 65602456 and ends at 65634217 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
APOA1BP (1q23.1) / ARMC1 (8q13.1)ARMC1 (8q13.1) / PEX19 (1q23.2)ARMC1 (8q13.1) / RB1CC1 (8q11.23)
ARMC1 (8q13.1) / RP11-574F21.3 ()ARMC1 (8q13.1) / SPAG11B (8p23.1)ARMC1 (8q13.1) / UBE2W (8q21.11)
ARMC1 RP11-574F21.3ARMC1 PEX19ARMC1 RB1CC1
ARMC1 UBE2WARMC1 SPAG11B

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC1   17684
Cards
Entrez_Gene (NCBI)ARMC1  55156  armadillo repeat containing 1
AliasesArcp
GeneCards (Weizmann)ARMC1
Ensembl hg19 (Hinxton)ENSG00000104442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000104442 [Gene_View]  chr8:65602456-65634217 [Contig_View]  ARMC1 [Vega]
ICGC DataPortalENSG00000104442
TCGA cBioPortalARMC1
AceView (NCBI)ARMC1
Genatlas (Paris)ARMC1
WikiGenes55156
SOURCE (Princeton)ARMC1
Genetics Home Reference (NIH)ARMC1
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC1  -     chr8:65602456-65634217 -  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC1  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblARMC1 - 8q13.1 [CytoView hg19]  ARMC1 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBIARMC1 [Mapview hg19]  ARMC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA808041 AK001373 AK024053 AK304463 AL512767
RefSeq transcript (Entrez)NM_001286702 NM_018120
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC1
Cluster EST : UnigeneHs.269542 [ NCBI ]
CGAP (NCI)Hs.269542
Alternative Splicing GalleryENSG00000104442
Gene ExpressionARMC1 [ NCBI-GEO ]   ARMC1 [ EBI - ARRAY_EXPRESS ]   ARMC1 [ SEEK ]   ARMC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55156
GTEX Portal (Tissue expression)ARMC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVT9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVT9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVT9
Splice isoforms : SwissVarQ9NVT9
PhosPhoSitePlusQ9NVT9
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    HMA_dom    UCP013899_metal-bd   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Conserved Domain (NCBI)ARMC1
DMDM Disease mutations55156
Blocks (Seattle)ARMC1
SuperfamilyQ9NVT9
Human Protein AtlasENSG00000104442
Peptide AtlasQ9NVT9
HPRD16506
IPIIPI00018260   IPI00909723   IPI00983385   IPI00984878   IPI00985340   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVT9
IntAct (EBI)Q9NVT9
FunCoupENSG00000104442
BioGRIDARMC1
STRING (EMBL)ARMC1
ZODIACARMC1
Ontologies - Pathways
QuickGOQ9NVT9
Ontology : AmiGOprotein binding  nucleus  cytoplasm  mitochondrion  metal ion transport  metal ion binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  mitochondrion  metal ion transport  metal ion binding  
NDEx NetworkARMC1
Atlas of Cancer Signalling NetworkARMC1
Wikipedia pathwaysARMC1
Orthology - Evolution
OrthoDB55156
GeneTree (enSembl)ENSG00000104442
Phylogenetic Trees/Animal Genes : TreeFamARMC1
HOVERGENQ9NVT9
HOGENOMQ9NVT9
Homologs : HomoloGeneARMC1
Homology/Alignments : Family Browser (UCSC)ARMC1
Gene fusions - Rearrangements
Fusion: TCGAARMC1 RP11-574F21.3
Fusion: TCGAARMC1 PEX19
Fusion: TCGAARMC1 RB1CC1
Fusion: TCGAARMC1 UBE2W
Fusion: TCGAARMC1 SPAG11B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC1
dbVarARMC1
ClinVarARMC1
1000_GenomesARMC1 
Exome Variant ServerARMC1
ExAC (Exome Aggregation Consortium)ARMC1 (select the gene name)
Genetic variants : HAPMAP55156
Genomic Variants (DGV)ARMC1 [DGVbeta]
DECIPHERARMC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC1 
Mutations
ICGC Data PortalARMC1 
TCGA Data PortalARMC1 
Broad Tumor PortalARMC1
OASIS PortalARMC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ARMC1
DgiDB (Drug Gene Interaction Database)ARMC1
DoCM (Curated mutations)ARMC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC1 (select a term)
intoGenARMC1
Cancer3DARMC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMC1
Genetic Testing Registry ARMC1
NextProtQ9NVT9 [Medical]
TSGene55156
GENETestsARMC1
Target ValidationARMC1
Huge Navigator ARMC1 [HugePedia]
snp3D : Map Gene to Disease55156
BioCentury BCIQARMC1
ClinGenARMC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55156
Chemical/Pharm GKB GenePA134882659
Clinical trialARMC1
Miscellaneous
canSAR (ICR)ARMC1 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC1
EVEXARMC1
GoPubMedARMC1
iHOPARMC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:45 CEST 2017

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