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ARMC10 (armadillo repeat containing 10)

Identity

Alias_symbol (synonym)MGC3195
SVH
Other aliasPNAS-112
PNAS112
PSEC0198
HGNC (Hugo) ARMC10
LocusID (NCBI) 83787
Atlas_Id 45885
Location 7q22.1  [Link to chromosome band 7q22]
Location_base_pair Starts at 102715328 and ends at 102740210 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMC10 (7q22.1) / STX16 (20q13.32)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC10   21706
Cards
Entrez_Gene (NCBI)ARMC10  83787  armadillo repeat containing 10
AliasesPNAS-112; PNAS112; PSEC0198; SVH
GeneCards (Weizmann)ARMC10
Ensembl hg19 (Hinxton)ENSG00000170632 [Gene_View]  chr7:102715328-102740210 [Contig_View]  ARMC10 [Vega]
Ensembl hg38 (Hinxton)ENSG00000170632 [Gene_View]  chr7:102715328-102740210 [Contig_View]  ARMC10 [Vega]
ICGC DataPortalENSG00000170632
TCGA cBioPortalARMC10
AceView (NCBI)ARMC10
Genatlas (Paris)ARMC10
WikiGenes83787
SOURCE (Princeton)ARMC10
Genetics Home Reference (NIH)ARMC10
Genomic and cartography
GoldenPath hg19 (UCSC)ARMC10  -     chr7:102715328-102740210 +  7q22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMC10  -     7q22.1   [Description]    (hg38-Dec_2013)
EnsemblARMC10 - 7q22.1 [CytoView hg19]  ARMC10 - 7q22.1 [CytoView hg38]
Mapping of homologs : NCBIARMC10 [Mapview hg19]  ARMC10 [Mapview hg38]
OMIM611864   
Gene and transcription
Genbank (Entrez)AF275808 AI761577 AK075500 AK095169 AK225082
RefSeq transcript (Entrez)NM_001161009 NM_001161010 NM_001161011 NM_001161012 NM_001161013 NM_031905
RefSeq genomic (Entrez)NC_000007 NC_018918 NG_030014 NT_007933 NT_187559 NW_004929332
Consensus coding sequences : CCDS (NCBI)ARMC10
Cluster EST : UnigeneHs.287412 [ NCBI ]
CGAP (NCI)Hs.287412
Alternative Splicing GalleryENSG00000170632
Gene ExpressionARMC10 [ NCBI-GEO ]   ARMC10 [ EBI - ARRAY_EXPRESS ]   ARMC10 [ SEEK ]   ARMC10 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83787
GTEX Portal (Tissue expression)ARMC10
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N2F6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N2F6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N2F6
Splice isoforms : SwissVarQ8N2F6
PhosPhoSitePlusQ8N2F6
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMC10
DMDM Disease mutations83787
Blocks (Seattle)ARMC10
SuperfamilyQ8N2F6
Human Protein AtlasENSG00000170632
Peptide AtlasQ8N2F6
HPRD18133
IPIIPI00166394   IPI00420025   IPI00217968   IPI00855858   IPI00926087   IPI00930356   IPI00926360   IPI00926510   IPI00925913   
Protein Interaction databases
DIP (DOE-UCLA)Q8N2F6
IntAct (EBI)Q8N2F6
FunCoupENSG00000170632
BioGRIDARMC10
STRING (EMBL)ARMC10
ZODIACARMC10
Ontologies - Pathways
QuickGOQ8N2F6
Ontology : AmiGOmitochondrion  endoplasmic reticulum membrane  integral component of membrane  regulation of growth  
Ontology : EGO-EBImitochondrion  endoplasmic reticulum membrane  integral component of membrane  regulation of growth  
NDEx NetworkARMC10
Atlas of Cancer Signalling NetworkARMC10
Wikipedia pathwaysARMC10
Orthology - Evolution
OrthoDB83787
GeneTree (enSembl)ENSG00000170632
Phylogenetic Trees/Animal Genes : TreeFamARMC10
HOVERGENQ8N2F6
HOGENOMQ8N2F6
Homologs : HomoloGeneARMC10
Homology/Alignments : Family Browser (UCSC)ARMC10
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC10
dbVarARMC10
ClinVarARMC10
1000_GenomesARMC10 
Exome Variant ServerARMC10
ExAC (Exome Aggregation Consortium)ARMC10 (select the gene name)
Genetic variants : HAPMAP83787
Genomic Variants (DGV)ARMC10 [DGVbeta]
DECIPHER (Syndromes)7:102715328-102740210  ENSG00000170632
CONAN: Copy Number AnalysisARMC10 
Mutations
ICGC Data PortalARMC10 
TCGA Data PortalARMC10 
Broad Tumor PortalARMC10
OASIS PortalARMC10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC10
DgiDB (Drug Gene Interaction Database)ARMC10
DoCM (Curated mutations)ARMC10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC10 (select a term)
intoGenARMC10
Cancer3DARMC10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611864   
Orphanet
MedgenARMC10
Genetic Testing Registry ARMC10
NextProtQ8N2F6 [Medical]
TSGene83787
GENETestsARMC10
Huge Navigator ARMC10 [HugePedia]
snp3D : Map Gene to Disease83787
BioCentury BCIQARMC10
ClinGenARMC10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83787
Chemical/Pharm GKB GenePA162376895
Clinical trialARMC10
Miscellaneous
canSAR (ICR)ARMC10 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC10
EVEXARMC10
GoPubMedARMC10
iHOPARMC10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:34 CET 2017

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