Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARMC12 (armadillo repeat containing 12)

Identity

Alias_namesC6orf81
chromosome 6 open reading frame 81
Alias_symbol (synonym)FLJ25390
Other alias
HGNC (Hugo) ARMC12
LocusID (NCBI) 221481
Atlas_Id 60508
Location 6p21.31  [Link to chromosome band 6p21]
Location_base_pair Starts at 35737032 and ends at 35748913 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC12   21099
Cards
Entrez_Gene (NCBI)ARMC12  221481  armadillo repeat containing 12
AliasesC6orf81
GeneCards (Weizmann)ARMC12
Ensembl hg19 (Hinxton)ENSG00000157343 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000157343 [Gene_View]  ENSG00000157343 [Sequence]  chr6:35737032-35748913 [Contig_View]  ARMC12 [Vega]
ICGC DataPortalENSG00000157343
TCGA cBioPortalARMC12
AceView (NCBI)ARMC12
Genatlas (Paris)ARMC12
WikiGenes221481
SOURCE (Princeton)ARMC12
Genetics Home Reference (NIH)ARMC12
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC12  -     chr6:35737032-35748913 +  6p21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC12  -     6p21.31   [Description]    (hg19-Feb_2009)
EnsemblARMC12 - 6p21.31 [CytoView hg19]  ARMC12 - 6p21.31 [CytoView hg38]
Mapping of homologs : NCBIARMC12 [Mapview hg19]  ARMC12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA625684 AK058119 BC033033 CR735810 DB070109
RefSeq transcript (Entrez)NM_001286574 NM_001286576 NM_145028
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC12
Cluster EST : UnigeneHs.533066 [ NCBI ]
CGAP (NCI)Hs.533066
Alternative Splicing GalleryENSG00000157343
Gene ExpressionARMC12 [ NCBI-GEO ]   ARMC12 [ EBI - ARRAY_EXPRESS ]   ARMC12 [ SEEK ]   ARMC12 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)221481
GTEX Portal (Tissue expression)ARMC12
Human Protein AtlasENSG00000157343-ARMC12 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T9G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T9G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T9G4
Splice isoforms : SwissVarQ5T9G4
PhosPhoSitePlusQ5T9G4
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMC12
DMDM Disease mutations221481
Blocks (Seattle)ARMC12
SuperfamilyQ5T9G4
Human Protein Atlas [tissue]ENSG00000157343-ARMC12 [tissue]
Peptide AtlasQ5T9G4
HPRD12901
IPIIPI00302301   IPI00736226   IPI00387033   IPI00946717   
Protein Interaction databases
DIP (DOE-UCLA)Q5T9G4
IntAct (EBI)Q5T9G4
FunCoupENSG00000157343
BioGRIDARMC12
STRING (EMBL)ARMC12
ZODIACARMC12
Ontologies - Pathways
QuickGOQ5T9G4
Ontology : AmiGOnucleus  
Ontology : EGO-EBInucleus  
NDEx NetworkARMC12
Atlas of Cancer Signalling NetworkARMC12
Wikipedia pathwaysARMC12
Orthology - Evolution
OrthoDB221481
GeneTree (enSembl)ENSG00000157343
Phylogenetic Trees/Animal Genes : TreeFamARMC12
HOVERGENQ5T9G4
HOGENOMQ5T9G4
Homologs : HomoloGeneARMC12
Homology/Alignments : Family Browser (UCSC)ARMC12
Gene fusions - Rearrangements
Fusion : QuiverARMC12
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC12
dbVarARMC12
ClinVarARMC12
1000_GenomesARMC12 
Exome Variant ServerARMC12
ExAC (Exome Aggregation Consortium)ENSG00000157343
GNOMAD BrowserENSG00000157343
Varsome BrowserARMC12
Genetic variants : HAPMAP221481
Genomic Variants (DGV)ARMC12 [DGVbeta]
DECIPHERARMC12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC12 
Mutations
ICGC Data PortalARMC12 
TCGA Data PortalARMC12 
Broad Tumor PortalARMC12
OASIS PortalARMC12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARMC12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC12
DgiDB (Drug Gene Interaction Database)ARMC12
DoCM (Curated mutations)ARMC12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC12 (select a term)
intoGenARMC12
Cancer3DARMC12(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARMC12
MedgenARMC12
Genetic Testing Registry ARMC12
NextProtQ5T9G4 [Medical]
TSGene221481
GENETestsARMC12
Target ValidationARMC12
Huge Navigator ARMC12 [HugePedia]
snp3D : Map Gene to Disease221481
BioCentury BCIQARMC12
ClinGenARMC12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD221481
Chemical/Pharm GKB GenePA134885894
Clinical trialARMC12
Miscellaneous
canSAR (ICR)ARMC12 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC12
EVEXARMC12
GoPubMedARMC12
iHOPARMC12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:35:59 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.