Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARMC2 (armadillo repeat containing 2)

Identity

Alias_symbol (synonym)DKFZp434P0714
bA787I22.1
Other alias
HGNC (Hugo) ARMC2
LocusID (NCBI) 84071
Atlas_Id 60509
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 108848416 and ends at 108974472 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AIM1 (6q21) / ARMC2 (6q21)ARMC2 (6q21) / ARMC2 (6q21)ARMC2 (6q21) / GPR173 (Xp11.22)
KDM4C (9p24.1) / ARMC2 (6q21)MROH1 (8q24.3) / ARMC2 (6q21)RAPGEF1 (9q34.13) / ARMC2 (6q21)
TP53I11 (11p11.2) / ARMC2 (6q21)AIM1 ARMC2HEATR7A ARMC2
KDM4C ARMC2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(6;8)(q21;q24) MROH1/ARMC2
t(6;9)(q21;p24) KDM4C/ARMC2


External links

Nomenclature
HGNC (Hugo)ARMC2   23045
Cards
Entrez_Gene (NCBI)ARMC2  84071  armadillo repeat containing 2
AliasesbA787I22.1
GeneCards (Weizmann)ARMC2
Ensembl hg19 (Hinxton)ENSG00000118690 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000118690 [Gene_View]  ENSG00000118690 [Sequence]  chr6:108848416-108974472 [Contig_View]  ARMC2 [Vega]
ICGC DataPortalENSG00000118690
TCGA cBioPortalARMC2
AceView (NCBI)ARMC2
Genatlas (Paris)ARMC2
WikiGenes84071
SOURCE (Princeton)ARMC2
Genetics Home Reference (NIH)ARMC2
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC2  -     chr6:108848416-108974472 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC2  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblARMC2 - 6q21 [CytoView hg19]  ARMC2 - 6q21 [CytoView hg38]
Mapping of homologs : NCBIARMC2 [Mapview hg19]  ARMC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK095234 AK292499 AK294574 AK309813 AK311225
RefSeq transcript (Entrez)NM_001286609 NM_032131
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC2
Cluster EST : UnigeneHs.645481 [ NCBI ]
CGAP (NCI)Hs.645481
Alternative Splicing GalleryENSG00000118690
Gene ExpressionARMC2 [ NCBI-GEO ]   ARMC2 [ EBI - ARRAY_EXPRESS ]   ARMC2 [ SEEK ]   ARMC2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)84071
GTEX Portal (Tissue expression)ARMC2
Human Protein AtlasENSG00000118690-ARMC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NEN0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NEN0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NEN0
Splice isoforms : SwissVarQ8NEN0
PhosPhoSitePlusQ8NEN0
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC2
DMDM Disease mutations84071
Blocks (Seattle)ARMC2
SuperfamilyQ8NEN0
Human Protein Atlas [tissue]ENSG00000118690-ARMC2 [tissue]
Peptide AtlasQ8NEN0
HPRD09809
IPIIPI00872354   IPI00942048   IPI00877584   IPI00879797   
Protein Interaction databases
DIP (DOE-UCLA)Q8NEN0
IntAct (EBI)Q8NEN0
FunCoupENSG00000118690
BioGRIDARMC2
STRING (EMBL)ARMC2
ZODIACARMC2
Ontologies - Pathways
QuickGOQ8NEN0
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkARMC2
Atlas of Cancer Signalling NetworkARMC2
Wikipedia pathwaysARMC2
Orthology - Evolution
OrthoDB84071
GeneTree (enSembl)ENSG00000118690
Phylogenetic Trees/Animal Genes : TreeFamARMC2
HOVERGENQ8NEN0
HOGENOMQ8NEN0
Homologs : HomoloGeneARMC2
Homology/Alignments : Family Browser (UCSC)ARMC2
Gene fusions - Rearrangements
Fusion PortalAIM1 ARMC2
Fusion PortalHEATR7A ARMC2
Fusion PortalKDM4C ARMC2
Fusion : QuiverARMC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC2
dbVarARMC2
ClinVarARMC2
1000_GenomesARMC2 
Exome Variant ServerARMC2
ExAC (Exome Aggregation Consortium)ENSG00000118690
GNOMAD BrowserENSG00000118690
Varsome BrowserARMC2
Genetic variants : HAPMAP84071
Genomic Variants (DGV)ARMC2 [DGVbeta]
DECIPHERARMC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC2 
Mutations
ICGC Data PortalARMC2 
TCGA Data PortalARMC2 
Broad Tumor PortalARMC2
OASIS PortalARMC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC2
DgiDB (Drug Gene Interaction Database)ARMC2
DoCM (Curated mutations)ARMC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC2 (select a term)
intoGenARMC2
Cancer3DARMC2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARMC2
MedgenARMC2
Genetic Testing Registry ARMC2
NextProtQ8NEN0 [Medical]
TSGene84071
GENETestsARMC2
Target ValidationARMC2
Huge Navigator ARMC2 [HugePedia]
snp3D : Map Gene to Disease84071
BioCentury BCIQARMC2
ClinGenARMC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84071
Chemical/Pharm GKB GenePA134943829
Clinical trialARMC2
Miscellaneous
canSAR (ICR)ARMC2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC2
EVEXARMC2
GoPubMedARMC2
iHOPARMC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 13:36:00 CEST 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.