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ARMC3 (armadillo repeat containing 3)

Identity

Alias_symbol (synonym)FLJ32827
CT81
Other aliasKU-CT-1
HGNC (Hugo) ARMC3
LocusID (NCBI) 219681
Atlas_Id 45669
Location 10p12.2  [Link to chromosome band 10p12]
Location_base_pair Starts at 23216953 and ends at 23327452 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
PARD3 (10p11.22) / ARMC3 (10p12.2)USP6NL (10p14) / ARMC3 (10p12.2)PARD3 10p11.22 / ARMC3 10p12.2
USP6NL 10p14 / ARMC3 10p12.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC3   30964
Cards
Entrez_Gene (NCBI)ARMC3  219681  armadillo repeat containing 3
AliasesCT81; KU-CT-1
GeneCards (Weizmann)ARMC3
Ensembl hg19 (Hinxton)ENSG00000165309 [Gene_View]  chr10:23216953-23327452 [Contig_View]  ARMC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000165309 [Gene_View]  chr10:23216953-23327452 [Contig_View]  ARMC3 [Vega]
ICGC DataPortalENSG00000165309
TCGA cBioPortalARMC3
AceView (NCBI)ARMC3
Genatlas (Paris)ARMC3
WikiGenes219681
SOURCE (Princeton)ARMC3
Genetics Home Reference (NIH)ARMC3
Genomic and cartography
GoldenPath hg19 (UCSC)ARMC3  -     chr10:23216953-23327452 +  10p12.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMC3  -     10p12.2   [Description]    (hg38-Dec_2013)
EnsemblARMC3 - 10p12.2 [CytoView hg19]  ARMC3 - 10p12.2 [CytoView hg38]
Mapping of homologs : NCBIARMC3 [Mapview hg19]  ARMC3 [Mapview hg38]
OMIM611226   
Gene and transcription
Genbank (Entrez)AA628128 AK057389 AK090961 AK098711 AK302104
RefSeq transcript (Entrez)NM_001282745 NM_001282746 NM_001282747 NM_173081
RefSeq genomic (Entrez)NC_000010 NC_018921 NT_008705 NW_004929370
Consensus coding sequences : CCDS (NCBI)ARMC3
Cluster EST : UnigeneHs.722481 [ NCBI ]
CGAP (NCI)Hs.722481
Alternative Splicing GalleryENSG00000165309
Gene ExpressionARMC3 [ NCBI-GEO ]   ARMC3 [ EBI - ARRAY_EXPRESS ]   ARMC3 [ SEEK ]   ARMC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)219681
GTEX Portal (Tissue expression)ARMC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5W041   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5W041  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5W041
Splice isoforms : SwissVarQ5W041
PhosPhoSitePlusQ5W041
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC3
DMDM Disease mutations219681
Blocks (Seattle)ARMC3
SuperfamilyQ5W041
Human Protein AtlasENSG00000165309
Peptide AtlasQ5W041
HPRD12487
IPIIPI00217612   IPI00936550   IPI00844025   IPI00867686   IPI01014983   IPI00478637   IPI01013752   
Protein Interaction databases
DIP (DOE-UCLA)Q5W041
IntAct (EBI)Q5W041
FunCoupENSG00000165309
BioGRIDARMC3
STRING (EMBL)ARMC3
ZODIACARMC3
Ontologies - Pathways
QuickGOQ5W041
Ontology : AmiGOnucleus  cytoplasm  extracellular exosome  
Ontology : EGO-EBInucleus  cytoplasm  extracellular exosome  
NDEx NetworkARMC3
Atlas of Cancer Signalling NetworkARMC3
Wikipedia pathwaysARMC3
Orthology - Evolution
OrthoDB219681
GeneTree (enSembl)ENSG00000165309
Phylogenetic Trees/Animal Genes : TreeFamARMC3
HOVERGENQ5W041
HOGENOMQ5W041
Homologs : HomoloGeneARMC3
Homology/Alignments : Family Browser (UCSC)ARMC3
Gene fusions - Rearrangements
Fusion : MitelmanPARD3/ARMC3 [10p11.22/10p12.2]  [t(10;10)(p11;p12)]  
Fusion : MitelmanUSP6NL/ARMC3 [10p14/10p12.2]  [t(10;10)(p12;p14)]  
Fusion: TCGAPARD3 10p11.22 ARMC3 10p12.2 BRCA
Fusion: TCGAUSP6NL 10p14 ARMC3 10p12.2 LUAD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC3
dbVarARMC3
ClinVarARMC3
1000_GenomesARMC3 
Exome Variant ServerARMC3
ExAC (Exome Aggregation Consortium)ARMC3 (select the gene name)
Genetic variants : HAPMAP219681
Genomic Variants (DGV)ARMC3 [DGVbeta]
DECIPHER (Syndromes)10:23216953-23327452  ENSG00000165309
CONAN: Copy Number AnalysisARMC3 
Mutations
ICGC Data PortalARMC3 
TCGA Data PortalARMC3 
Broad Tumor PortalARMC3
OASIS PortalARMC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC3
DgiDB (Drug Gene Interaction Database)ARMC3
DoCM (Curated mutations)ARMC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC3 (select a term)
intoGenARMC3
Cancer3DARMC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611226   
Orphanet
MedgenARMC3
Genetic Testing Registry ARMC3
NextProtQ5W041 [Medical]
TSGene219681
GENETestsARMC3
Huge Navigator ARMC3 [HugePedia]
snp3D : Map Gene to Disease219681
BioCentury BCIQARMC3
ClinGenARMC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD219681
Chemical/Pharm GKB GenePA134917281
Clinical trialARMC3
Miscellaneous
canSAR (ICR)ARMC3 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC3
EVEXARMC3
GoPubMedARMC3
iHOPARMC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:04 CEST 2017

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