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ARMC4 (armadillo repeat containing 4)

Identity

Alias_symbol (synonym)FLJ10817
FLJ10376
DKFZP434P1735
CILD23
Other alias
HGNC (Hugo) ARMC4
LocusID (NCBI) 55130
Atlas_Id 60511
Location 10p12.1  [Link to chromosome band 10p12]
Location_base_pair Starts at 27812164 and ends at 27998906 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARHGAP21 (10p12.1) / ARMC4 (10p12.1)CLPB (11q13.4) / ARMC4 (10p12.1)PARD3 (10p11.22) / ARMC4 (10p12.1)
CLPB ARMC4PARD3 ARMC4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC4   25583
Cards
Entrez_Gene (NCBI)ARMC4  55130  armadillo repeat containing 4
AliasesCILD23
GeneCards (Weizmann)ARMC4
Ensembl hg19 (Hinxton)ENSG00000169126 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000169126 [Gene_View]  chr10:27812164-27998906 [Contig_View]  ARMC4 [Vega]
ICGC DataPortalENSG00000169126
TCGA cBioPortalARMC4
AceView (NCBI)ARMC4
Genatlas (Paris)ARMC4
WikiGenes55130
SOURCE (Princeton)ARMC4
Genetics Home Reference (NIH)ARMC4
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC4  -     chr10:27812164-27998906 -  10p12.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC4  -     10p12.1   [Description]    (hg19-Feb_2009)
EnsemblARMC4 - 10p12.1 [CytoView hg19]  ARMC4 - 10p12.1 [CytoView hg38]
Mapping of homologs : NCBIARMC4 [Mapview hg19]  ARMC4 [Mapview hg38]
OMIM615408   615451   
Gene and transcription
Genbank (Entrez)AK001238 AK001679 AK292521 AK301708 AK302048
RefSeq transcript (Entrez)NM_001290020 NM_001290021 NM_001312689 NM_018076
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC4
Cluster EST : UnigeneHs.127530 [ NCBI ]
CGAP (NCI)Hs.127530
Alternative Splicing GalleryENSG00000169126
Gene ExpressionARMC4 [ NCBI-GEO ]   ARMC4 [ EBI - ARRAY_EXPRESS ]   ARMC4 [ SEEK ]   ARMC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55130
GTEX Portal (Tissue expression)ARMC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T2S8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T2S8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T2S8
Splice isoforms : SwissVarQ5T2S8
PhosPhoSitePlusQ5T2S8
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    ARMC4    GSKIP_dom   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC4
DMDM Disease mutations55130
Blocks (Seattle)ARMC4
SuperfamilyQ5T2S8
Human Protein AtlasENSG00000169126
Peptide AtlasQ5T2S8
HPRD10663
IPIIPI00328409   IPI00922076   IPI00922087   IPI00301358   IPI01013006   
Protein Interaction databases
DIP (DOE-UCLA)Q5T2S8
IntAct (EBI)Q5T2S8
FunCoupENSG00000169126
BioGRIDARMC4
STRING (EMBL)ARMC4
ZODIACARMC4
Ontologies - Pathways
QuickGOQ5T2S8
Ontology : AmiGOcilium movement  regulation of cilium beat frequency  nucleus  cytoplasm  axoneme  determination of left/right symmetry  heart development  ventricular system development  outer dynein arm assembly  ciliary base  
Ontology : EGO-EBIcilium movement  regulation of cilium beat frequency  nucleus  cytoplasm  axoneme  determination of left/right symmetry  heart development  ventricular system development  outer dynein arm assembly  ciliary base  
NDEx NetworkARMC4
Atlas of Cancer Signalling NetworkARMC4
Wikipedia pathwaysARMC4
Orthology - Evolution
OrthoDB55130
GeneTree (enSembl)ENSG00000169126
Phylogenetic Trees/Animal Genes : TreeFamARMC4
HOVERGENQ5T2S8
HOGENOMQ5T2S8
Homologs : HomoloGeneARMC4
Homology/Alignments : Family Browser (UCSC)ARMC4
Gene fusions - Rearrangements
Fusion: TCGACLPB ARMC4
Fusion: TCGAPARD3 ARMC4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC4
dbVarARMC4
ClinVarARMC4
1000_GenomesARMC4 
Exome Variant ServerARMC4
ExAC (Exome Aggregation Consortium)ARMC4 (select the gene name)
Genetic variants : HAPMAP55130
Genomic Variants (DGV)ARMC4 [DGVbeta]
DECIPHERARMC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC4 
Mutations
ICGC Data PortalARMC4 
TCGA Data PortalARMC4 
Broad Tumor PortalARMC4
OASIS PortalARMC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ARMC4
DgiDB (Drug Gene Interaction Database)ARMC4
DoCM (Curated mutations)ARMC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC4 (select a term)
intoGenARMC4
Cancer3DARMC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615408    615451   
Orphanet665   
MedgenARMC4
Genetic Testing Registry ARMC4
NextProtQ5T2S8 [Medical]
TSGene55130
GENETestsARMC4
Target ValidationARMC4
Huge Navigator ARMC4 [HugePedia]
snp3D : Map Gene to Disease55130
BioCentury BCIQARMC4
ClinGenARMC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55130
Chemical/Pharm GKB GenePA134877125
Clinical trialARMC4
Miscellaneous
canSAR (ICR)ARMC4 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC4
EVEXARMC4
GoPubMedARMC4
iHOPARMC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:46 CEST 2017

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