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ARMC5 (armadillo repeat containing 5)

Identity

Alias_symbol (synonym)FLJ13063
Other aliasAIMAH2
HGNC (Hugo) ARMC5
LocusID (NCBI) 79798
Atlas_Id 55037
Location 16p11.2  [Link to chromosome band 16p11]
Location_base_pair Starts at 31458996 and ends at 31467167 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
RPS3 (11q13.4) / ARMC5 (16p11.2)SFRP1 (8p11.21) / ARMC5 (16p11.2)SFRP1 8p11.21 / ARMC5 16p11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC5   25781
Cards
Entrez_Gene (NCBI)ARMC5  79798  armadillo repeat containing 5
AliasesAIMAH2
GeneCards (Weizmann)ARMC5
Ensembl hg19 (Hinxton)ENSG00000140691 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140691 [Gene_View]  chr16:31458996-31467167 [Contig_View]  ARMC5 [Vega]
ICGC DataPortalENSG00000140691
TCGA cBioPortalARMC5
AceView (NCBI)ARMC5
Genatlas (Paris)ARMC5
WikiGenes79798
SOURCE (Princeton)ARMC5
Genetics Home Reference (NIH)ARMC5
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC5  -     chr16:31458996-31467167 +  16p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC5  -     16p11.2   [Description]    (hg19-Feb_2009)
EnsemblARMC5 - 16p11.2 [CytoView hg19]  ARMC5 - 16p11.2 [CytoView hg38]
Mapping of homologs : NCBIARMC5 [Mapview hg19]  ARMC5 [Mapview hg38]
OMIM615549   615954   
Gene and transcription
Genbank (Entrez)AK023125 AK024430 AK294897 AK295790 AK297115
RefSeq transcript (Entrez)NM_001105247 NM_001288767 NM_001301820 NM_024742
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC5
Cluster EST : UnigeneHs.732945 [ NCBI ]
CGAP (NCI)Hs.732945
Alternative Splicing GalleryENSG00000140691
Gene ExpressionARMC5 [ NCBI-GEO ]   ARMC5 [ EBI - ARRAY_EXPRESS ]   ARMC5 [ SEEK ]   ARMC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79798
GTEX Portal (Tissue expression)ARMC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96C12   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96C12  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96C12
Splice isoforms : SwissVarQ96C12
PhosPhoSitePlusQ96C12
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)    BTB (PS50097)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo    BTB/POZ_dom   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC5
DMDM Disease mutations79798
Blocks (Seattle)ARMC5
SuperfamilyQ96C12
Human Protein AtlasENSG00000140691
Peptide AtlasQ96C12
HPRD07809
IPIIPI00100910   IPI00983741   IPI00843868   IPI00844216   IPI00909919   IPI01015177   IPI00303372   
Protein Interaction databases
DIP (DOE-UCLA)Q96C12
IntAct (EBI)Q96C12
FunCoupENSG00000140691
BioGRIDARMC5
STRING (EMBL)ARMC5
ZODIACARMC5
Ontologies - Pathways
QuickGOQ96C12
Ontology : AmiGOnucleoplasm  cytoplasm  cytoplasm  cytosol  focal adhesion  
Ontology : EGO-EBInucleoplasm  cytoplasm  cytoplasm  cytosol  focal adhesion  
NDEx NetworkARMC5
Atlas of Cancer Signalling NetworkARMC5
Wikipedia pathwaysARMC5
Orthology - Evolution
OrthoDB79798
GeneTree (enSembl)ENSG00000140691
Phylogenetic Trees/Animal Genes : TreeFamARMC5
HOVERGENQ96C12
HOGENOMQ96C12
Homologs : HomoloGeneARMC5
Homology/Alignments : Family Browser (UCSC)ARMC5
Gene fusions - Rearrangements
Fusion : MitelmanSFRP1/ARMC5 [8p11.21/16p11.2]  [t(8;16)(p11;p11)]  
Fusion: TCGASFRP1 8p11.21 ARMC5 16p11.2 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC5
dbVarARMC5
ClinVarARMC5
1000_GenomesARMC5 
Exome Variant ServerARMC5
ExAC (Exome Aggregation Consortium)ARMC5 (select the gene name)
Genetic variants : HAPMAP79798
Genomic Variants (DGV)ARMC5 [DGVbeta]
DECIPHERARMC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC5 
Mutations
ICGC Data PortalARMC5 
TCGA Data PortalARMC5 
Broad Tumor PortalARMC5
OASIS PortalARMC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC5
DgiDB (Drug Gene Interaction Database)ARMC5
DoCM (Curated mutations)ARMC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC5 (select a term)
intoGenARMC5
Cancer3DARMC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615549    615954   
Orphanet18374   
MedgenARMC5
Genetic Testing Registry ARMC5
NextProtQ96C12 [Medical]
TSGene79798
GENETestsARMC5
Target ValidationARMC5
Huge Navigator ARMC5 [HugePedia]
snp3D : Map Gene to Disease79798
BioCentury BCIQARMC5
ClinGenARMC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79798
Chemical/Pharm GKB GenePA134926941
Clinical trialARMC5
Miscellaneous
canSAR (ICR)ARMC5 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC5
EVEXARMC5
GoPubMedARMC5
iHOPARMC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 25 18:58:07 CEST 2017

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