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ARMC6 (armadillo repeat containing 6)

Identity

Alias_symbol (synonym)MGC19595
Other aliasR30923_1
HGNC (Hugo) ARMC6
LocusID (NCBI) 93436
Atlas_Id 60513
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 19033578 and ends at 19058178 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARMC6 (19p13.11) / ARMC6 (19p13.11)SLC25A42 (19p13.11) / ARMC6 (19p13.11)SUGP2 (19p13.11) / ARMC6 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC6   25049
Cards
Entrez_Gene (NCBI)ARMC6  93436  armadillo repeat containing 6
AliasesR30923_1
GeneCards (Weizmann)ARMC6
Ensembl hg19 (Hinxton)ENSG00000105676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105676 [Gene_View]  chr19:19033578-19058178 [Contig_View]  ARMC6 [Vega]
ICGC DataPortalENSG00000105676
TCGA cBioPortalARMC6
AceView (NCBI)ARMC6
Genatlas (Paris)ARMC6
WikiGenes93436
SOURCE (Princeton)ARMC6
Genetics Home Reference (NIH)ARMC6
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC6  -     chr19:19033578-19058178 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC6  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblARMC6 - 19p13.11 [CytoView hg19]  ARMC6 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIARMC6 [Mapview hg19]  ARMC6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK295488 AK303914 AW615748 BC003700 BC056161
RefSeq transcript (Entrez)NM_001199196 NM_033415
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC6
Cluster EST : UnigeneHs.77876 [ NCBI ]
CGAP (NCI)Hs.77876
Alternative Splicing GalleryENSG00000105676
Gene ExpressionARMC6 [ NCBI-GEO ]   ARMC6 [ EBI - ARRAY_EXPRESS ]   ARMC6 [ SEEK ]   ARMC6 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)93436
GTEX Portal (Tissue expression)ARMC6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NXE6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NXE6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NXE6
Splice isoforms : SwissVarQ6NXE6
PhosPhoSitePlusQ6NXE6
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC6
DMDM Disease mutations93436
Blocks (Seattle)ARMC6
SuperfamilyQ6NXE6
Human Protein AtlasENSG00000105676
Peptide AtlasQ6NXE6
HPRD12488
IPIIPI00020196   IPI00871811   IPI00470847   IPI01011489   IPI01011953   IPI01011007   IPI01009398   IPI01015653   IPI01015874   IPI01015227   IPI01015650   IPI01014063   IPI01014728   IPI01013141   IPI01013596   IPI01012432   IPI01012681   IPI01011916   IPI01012388   IPI01010733   
Protein Interaction databases
DIP (DOE-UCLA)Q6NXE6
IntAct (EBI)Q6NXE6
FunCoupENSG00000105676
BioGRIDARMC6
STRING (EMBL)ARMC6
ZODIACARMC6
Ontologies - Pathways
QuickGOQ6NXE6
Ontology : AmiGOhematopoietic progenitor cell differentiation  cytosol  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  cytosol  
NDEx NetworkARMC6
Atlas of Cancer Signalling NetworkARMC6
Wikipedia pathwaysARMC6
Orthology - Evolution
OrthoDB93436
GeneTree (enSembl)ENSG00000105676
Phylogenetic Trees/Animal Genes : TreeFamARMC6
HOVERGENQ6NXE6
HOGENOMQ6NXE6
Homologs : HomoloGeneARMC6
Homology/Alignments : Family Browser (UCSC)ARMC6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC6
dbVarARMC6
ClinVarARMC6
1000_GenomesARMC6 
Exome Variant ServerARMC6
ExAC (Exome Aggregation Consortium)ARMC6 (select the gene name)
Genetic variants : HAPMAP93436
Genomic Variants (DGV)ARMC6 [DGVbeta]
DECIPHERARMC6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC6 
Mutations
ICGC Data PortalARMC6 
TCGA Data PortalARMC6 
Broad Tumor PortalARMC6
OASIS PortalARMC6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC6
DgiDB (Drug Gene Interaction Database)ARMC6
DoCM (Curated mutations)ARMC6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC6 (select a term)
intoGenARMC6
Cancer3DARMC6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMC6
Genetic Testing Registry ARMC6
NextProtQ6NXE6 [Medical]
TSGene93436
GENETestsARMC6
Target ValidationARMC6
Huge Navigator ARMC6 [HugePedia]
snp3D : Map Gene to Disease93436
BioCentury BCIQARMC6
ClinGenARMC6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93436
Chemical/Pharm GKB GenePA134884604
Clinical trialARMC6
Miscellaneous
canSAR (ICR)ARMC6 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC6
EVEXARMC6
GoPubMedARMC6
iHOPARMC6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:49 CEST 2017

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